barSeed - Barley Seed Development Database

Probe CUST_39208_PI390587928

Source Contig U35_5882

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39208_PI390587928	Hv_44K_v2	TTGTTTGTTTGACTCCAGTGTGGCTCAAGCTCAAATCTTGTTTGTATGGAGGGGAAAAAA	1442	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7022.3	4759	3e-22	4617 - 4672	100	56 / 56	plus	ABC12672 ABC22302
JLOC1	JLOC1_4623.1	4003	1e-22	3602 - 3657	100	56 / 56	plus
Harvest21	ABC12672	1503	3e-25	1443 - 1502	100	60 / 60	plus	ABC12672
Harvest35	U35_5882	1503	3e-25	1443 - 1502	100	60 / 60	plus

Contig Sequence (1503 bp)

>U35_5882 1503 Hv_44K_v2
GGCACGNAGGGGTCGTGTGGAAAGTAGAGATATGATCTTTCAGAAGAAGAAACAGAAGCA
CATAAATTGAAAGGCACGTCCTCAGGGATAACAGGAGCTAATGAGAATCGGCCCTCGCCT
TTTCGCATGCAAACTTCAGCGCCATCTGATGACAGTGATGATGGTGATCTCGGCCTGAAT
TATGGAAGGTTAACTCCTGGACTAAGAAACAAACTCAGGCAACATCCACAATACAAAATT
CCTGGGGATAGCTTGCCACGTAAACAGTCCTTAGAAGGAGCTCCTGCCAGCATTGAAGAA
CCAGTGCATTTCAAAGAGAATGGCACATCATCTGAACAGACCGGTGATACTCATAAAGGT
TCACGCACAGCCAAGAATTCTTTTGGTGCAAATTACCAGAGTGAACATCTTGATGGGAGA
CATACTGTTGGCAAACCTGTGGAATCAAGATCACCCATGACGAGGAATGACTTCTATTCA
GGTGAATCAAGATCATCGTTGACGAGGAATGACTTCTATTCAGGTGAATCAAGATCATCC
TTGACGAGGAATGACTTCTATTCAGGTGATACAGGGAAGTTATCTGAACGATCTGGTAGT
TCTCCAATACGTAGCCCAACCAAGACTTCTGTTAAGGAAAATTCTATTCAAGAGCCACAT
CATGAAAGACCGGGTAGTGGGGTGCGCAGGGAAAGTAGATCAAGAACTGCCAGAACTTTC
TTTGATTCAGATGAGAGCGAAGAGGAATTAGAACGACGACAGTCTGGCCAGACAAAGTTG
TCTAAAGAGCAGATACGATCACGCAGGACCCCCCGGGAGGTAGCACCCGATACAAAGCGA
GATGGCAGAGCCCGTACTGGAGCACAGTTTGCTGTTGAAACTGAAAGCCCAAAAAGCCCT
GCTAAAGCATTCTCCAGCTCAAGTACTGAAGAAAGAAAAGTGGCACCTGTGTACTCCAGG
GTTTCAGTACAGCAATCTTCGCCAAATCCTGTGCGCATTGAACCTCCCATGGCTAGAGGC
AAGTGGCAAGAAGATGAGCCGGAGGGAAGTTCTTCTCCAGAAAACGAGGCAAACACACAG
ACCTCAGCAGATACACTGAAAGTAAGCACCCCAACATCTGGTCCTGCCCACGTTCACCCC
AAGCTTCCAACAGACTATGATTCTTTTGCTGCACATTTTAAGTCGCTCCGAACCAATCGC
CGTTAGGGTTACACATACACACACAGTTTGAGAAGCTTTTATTGGGATGTCAGATGTGTA
CAGTATAGAAACACAATGGCTGGAGAGACTTATTGTGCCCTGGTATTTTTGTAAGGACAC
CATTCTTTCATTCTCTTTTGGTCTCAGATATACAGCGTCTTTGATAGGTGATGTTTTCCT
TGTAGTGTTGTAATAAGCACATTATGCGCACAGATGTACAGAACTTCGGGGTTTCGTTCA
ATTTGTTTGTTTGACTCCAGTGTGGCTCAAGCTCAAATCTTGTTTGTATGGAGGGGAAAA
AAA

Homology of Contig U35_5882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g51010.2	957	6e-74	protein\|DUF292 domain containing protein, expressed
Brachypodium v1_2	Bradi2g47747.1	1130	1e-134
Arabidopsis v10	None