barSeed - Barley Seed Development Database

Probe CUST_391_PI390587928

Source Contig U35_9326

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_391_PI390587928	Hv_44K_v2	AAATTTATTGCTTTGTGGAGAGGCTGTCCCAAATGTATTTGATGGCAAGATGGACCTTGG	675	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376361	2586	2e-24	1357 - 1416	100	60 / 60	plus	None
MLOC	MLOC_16093.1	1616	2e-24	944 - 1003	100	60 / 60	minus	None
JLOC1	JLOC1_11064.1	1749	8e-25	746 - 805	100	60 / 60	plus
Harvest35	U35_9326	801	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (801 bp)

>U35_9326 801 Hv_44K_v2
TTGCTGAGAAACTTTGGGTCATGGTGTTTGGGGGCGGGGTTTAAAGGCAGTGCTGGCGCA
GTGGAGCAATCAGGGTATCAGGTTCAGCTCTGACCCAGAAACAGCTATGGGACTGGTACA
ACATGAAGGTGGCCCTTGTGGCGTCTTAGCTACAGTGCAGGCATATGTCCTTAAATATCT
TCTGTTTTTCTCTGATAATTTGGGTAACCCAGAGGTCAGTGATCCGTCATTTGCTTTGGG
ACAAAGACGATTTTATGAGAGTTCTTTTGCTGCAAGGGATGATTTTTCTTCTCTTACTGA
GGATGGAAAGACGAGAGCATTGGTTCATGCTATGGTGGAAATTCTATTTTTATGTGGAAC
TGGGAAAAGAGCTGTTGTGGCATTCATTGGAGGTGTTATTCGTGAGAAGAAAGTTGATGC
TGCTTTGGAAGGCCTTTCTGTTGAATCGGCAATTGATCTCCAGAAAGTTCTTAGAATAAG
TACATTTACCTCAAGGAAGGATGCATTCAACATGCTTCTCGCAAACATTCCTCTGTTTGA
AAGTCGATTGGGTGCTATGTTATTTCTTATCTCTTCTTTACTTTCGCGGGGACTGGATTG
TATCCAAGCAGATAGGGATGATCCAAGCCAACCATTGGTCACGGCTCCATTTGGGCATGC
TTCTCAGGAAATTGTAAATTTATTGCTTTGTGGAGAGGCTGTCCCAAATGTATTTGATGG
CAAGATGGACCTTGGTGGCGGCATGTCCCTGAAAGGCATTCCAAATGATGTGGAAGTTGG
GTTCCTTACCCTTCTGGAATC

Homology of Contig U35_9326 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34440.1	622	2e-144	protein\|ubiquitin interaction motif-containing protein, putative, expressed
Brachypodium v1_2	Bradi5g09920.1	628	1e-154
Arabidopsis v10	AT1G43690.1	599	9e-98	ubiquitin interaction motif-containing protein \| chr1:16478519-16482589 FORWARD LENGTH=599