barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39196_PI390587928Hv_44K_v2GTGGTGTTTTCCACTTGATCTGATGACTGTTAATCGAAAAACGTTATTCTGCTCAAAAAA1066GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5441.5351.1130.8940.3810.402
Raw 832.3601288.772818.5951009.656152.922174.865



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_35008.113005e-221244 - 129810055 / 55plus
Harvest35U35_589411363e-251067 - 112610060 / 60plus



Contig Sequence (1136 bp)

>U35_5894 1136 Hv_44K_v2
GCTTGCCCGCTGGCTGCCGCGGAGAGGGTACTCCCGGTTCGCGAGCGGATTCACCCCCTT
GGAGCCGAAGAAGCTGGGATCCATCCTCGACGTCGAGCGCGCCAAGGGCCTCTCCCCCGA
ACACCTCGTCGCGGCATGGGATGACTACCACTTGGGAAGAGGTCACATTGGTGTATCTAT
GAAAGCAAAGCTTTACCGTCTCTTGGAACAAAGATCGGCTACATGCCCATATTTTGTTAT
TCCTTTGTGGAGAGGAAGTGGATATACCACCATGTTTATGCAAGCAAATGAAACCAGGGA
TTATAACCCTTGGAACTCAAATCTTCTTATCTTAGATGGGGCTATTTGAACCTGGTATCT
AGTCCAGCTGCCACACATGATCTTCACAGGACTTGAAGACTACAAAGCAAGAGGAACTCA
AGCAAGCCCTTACTGTACAGTCACTCATTTCACAGAGTTTGCAGAAACCAAGGATACAGT
GCTTGTCCGAGGAGACGTTGTCTTCACCAGCAAACTAACCGATGCAGAGGCGAAGTGTCT
TTTAGAGACAGCACACTCGTTCTACCTGAACGATGTGCGGTACAAGCTCGTGGAGCGTTT
CAACAAGGAAACACGCGATTTCGAGTTCAAAGACGTCCTTCAGGCGCTTGAAATGCCGTC
CATGTGAGCAGAGATGTGAAGCCATCGTGCGATGATTAAGCTTCCCAGCACGGTGAACCT
GAAGCTACTGCCGAGAATGAAACTATGAGTTCTTCACCTCCCCCCGCCCCCCACCCCACC
CCATTTTTGTTGTGGCAGTTGTATCCAGAAAAACAACACCCCTAAGGCCTTTAATTTGCC
GAGTGGTCGTTCATCCTGCTGATTTACCTTAGCCATAGCAAAGAAGCGAACCTAAGCAGA
CCCGGGCAAGGATTTAATAGCCATTCTGTAGCTATTTTGCTGTTTTTTTCTCATAGCCTC
TTGGCTAAAATTTTCACAATAATATGGTAGAAACAGAAACACGCTATACTTGTTTCAGAT
CCTAGCGACAAAATGTGTGTTTAAATTATGGATGGAAATCAGCTGTGTGGTGTTTTCCAC
TTGATCTGATGACTGTTAATCGAAAAACGTTATTCTGCTCAAAAAAAAAAAAAAAG



Homology of Contig U35_5894 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g20860.12374e-113protein|ATP11 protein, expressed
Brachypodium v1_2Bradi3g11460.12413e-123
Arabidopsis v10AT2G34050.12482e-90INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248