barSeed - Barley Seed Development Database

Probe CUST_39190_PI390587928

Source Contig U35_10903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39190_PI390587928	Hv_44K_v2	GAAGTCAAACATGCTGCAAATTGTGATTATATCAATTCGCGATGTAACACGGATTATGAA	1021	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14312.7	6375	2e-24	6119 - 6178	100	60 / 60	plus	ABC09063
JLOC1	JLOC1_9770.11	5526	8e-25	5147 - 5206	100	60 / 60	plus
JLOC1	JLOC1_9770.10	5663	8e-25	5284 - 5343	100	60 / 60	plus
JLOC1	JLOC1_9770.9	5741	8e-25	5362 - 5421	100	60 / 60	plus
JLOC1	JLOC1_9770.8	5435	8e-25	5056 - 5115	100	60 / 60	plus
JLOC1	JLOC1_9770.7	5650	8e-25	5271 - 5330	100	60 / 60	plus
JLOC1	JLOC1_9770.6	6013	8e-25	5634 - 5693	100	60 / 60	plus
JLOC1	JLOC1_9770.5	6026	8e-25	5647 - 5706	100	60 / 60	plus
JLOC1	JLOC1_9770.4	6241	8e-25	5862 - 5921	100	60 / 60	plus
JLOC1	JLOC1_9770.3	6319	8e-25	5940 - 5999	100	60 / 60	plus
JLOC1	JLOC1_9770.2	6228	8e-25	5849 - 5908	100	60 / 60	plus
JLOC1	JLOC1_9770.1	6104	8e-25	5725 - 5784	100	60 / 60	plus
Harvest35	U35_10903	1125	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_10903 1125 Hv_44K_v2
TGAAGACAATGCATTGCTATCTTCATCTTTGCGTGTGCGTCACCTATTGAAAGATGTACA
CCCTTGGTGGGTTTTGTTAAGGAGAAGGAATTGCTATTGACACAACGAGAGGATTCCTCG
TGAAATGGGTAGGCGTTTGGATGGCATGTTGCAACAATAGGCCATTGACGGCAGGCCAAT
CAGATCATCAGATGGCGCTCTGTTGGGCGGTTCAGATTATGGAACAAAGAAAGACTGCCT
CAGGTCCATAGTCTACTGCAATTGTGCAGAACACATTCGGTCTGATTATATAACTAGACT
TCCACAAGGCTGCAGCTGGATGGTTTCTTTCTGGGATTGCAATACTTGCTTTAGTGCTTA
ACAGGATACTGTCTTTCTCATAGATATAAATACATGCGCATGGGCATTTCCATTTTGAGA
CATGCCAGTAGAGATAAATCTCACTGGCCCTAGAGCAGGGTATACCTGATGATGTTCCAC
AATCTGTCCTGAGGATCTTTAAAACACTGAGGACACATCTTAGGCCCTGATTGGATTGTT
GTTTTTCATCGCTTTACACCTGTAAAAGATACAAACCTCCTGTAAATTAAATACCGGTGT
AGAAAAATACACGGATTTCAAGCGGAGTCTTAGCGTGGAATGCTGCTGCTTCGGTGGTGG
TCCTGTGAAGTGTCAGGTTAGCATAAGGTGGCCCTTATTATTTTTTGTCTGAATCATATT
TGCTTGTTCGGAATTTCGCAGGCCTGTGTTGTACTGTACTGCTCTTGCTCTTGGTCTTTC
TTCTTGGTCTTGTACTGTACTGTATCACAACCTGTCCTGCAGAATTTCAGAATGCTGAGG
GCTATGACTTCGGTCCTGGCCGGATGCTGCTGGACGGTGGTGGTCAATGAAGATCTCAGG
GTGTTTCCTGTTCAGTTGGTTTTGATCCTGTTGATGAAAAGAGTACTTTGCCAGCTTGGT
GTGATGCATGAATGCCCCCAGGAATACCTTACGTCCAAGCTGGAGTGCTTTTCTTGTACT
TGAAGTCAAACATGCTGCAAATTGTGATTATATCAATTCGCGATGTAACACGGATTATGA
ATATTTTTTTGACGAAAGGATCTGATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None