barSeed - Barley Seed Development Database

Probe CUST_39182_PI390587928

Source Contig U35_10912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39182_PI390587928	Hv_44K_v2	ACATGATCCAGCAGTTGGGGACGCCGTTGTACAGCGTCGGGGCGAGGGTTCTTGGGATCA	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374234	1937	2e-24	785 - 844	100	60 / 60	plus	ABC15337 ABC16360 ABC21124
MLOC	AK372646	2288	2e-24	796 - 855	100	60 / 60	plus	ABC15337 ABC16360 ABC21124
MLOC	MLOC_40279.1	643	2e-24	437 - 496	100	60 / 60	plus	ABC15337
JLOC1	JLOC1_26326.1	797	8e-25	429 - 488	100	60 / 60	plus
Harvest21	ABC25898	700	3e-25	641 - 700	100	60 / 60	plus
Harvest35	U35_10912	701	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_10912 701 Hv_44K_v2
GACGGCATGGCTCGGCATGCCGTCCTGCTCGTGGTCACCGTCGCCGTGCTCCTCGCGCGC
CGAGCCGCCGCCGAGTACCCGTGGCCAGTCTGCGGCAGCACCGGCAGCTTCGCCGCCAAC
GACAGCACGTACCTGGCGAGCATCGGCGCCATCGCCGCCACCCTCCCGAGCAACGCCTCG
GCGTCCCCGGGCGGCCTCTACGCCACGGCGCGGGCCGGCCAGGTCCGCGCCCTCGGGCTC
TGCCGCGGCGACGCCAACGCCACCGCCTGCTCCGGCTGCCTCGCCCAGGGATTCCAGGAC
CTGCCCAGCGCCTGCGCCTACAGCAAGGAGGCCACCATGTACTACGACCCCTGCTTCCTC
CACTACTCCAGCCTCGACTCGCGCGCCTCCGACGACACCGCGTCGGGCTCGGCCTTCAGC
ACCGCCTACAGCGACAACGCCACGGCGGAGCCGGCCCGGTTCGACCGCGTCGTGGCGGCG
CTCCTCAACGCCACCGCGGACTACGCCGCGCACAATTCCTCGGCGACGCGGCTGTATGCG
TCCGGTGTGGTCGCCTTCGACCGGGAGATCCCCGAGGTGTACAGCTGGGCGCAGTGCACG
CCGGACCTCACGCCGGCGCGGTGCCGGGATTGCCTCGCCAACATGATCCAGCAGTTGGGG
ACGCCGTTGTACAGCGTCGGGGCGAGGGTTCTTGGGATCAG

Homology of Contig U35_10912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35310.2	519	2e-61	protein\|TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	3e-67
Arabidopsis v10	None