barSeed - Barley Seed Development Database

Probe CUST_39181_PI390587928

Source Contig U35_10913

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39181_PI390587928	Hv_44K_v2	ATTCTGAGATTTAATTCGGCTGAGCTCCTCCTATTCCTTGAGGAGCATGCACAATGTCGT	654	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.176	2.265	2.238	1.058	0.730	0.701
Raw	10.734	34.941	29.011	20.974	2.758	4.121

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80047.2	2937	2e-24	1372 - 1431	100	60 / 60	plus	ABC25563
MLOC	MLOC_80046.2	3079	2e-24	1882 - 1941	100	60 / 60	plus	ABC25563
MLOC	MLOC_80047.1	2149	2e-24	1903 - 1962	100	60 / 60	plus	ABC25563
MLOC	MLOC_80046.1	3639	2e-24	1903 - 1962	100	60 / 60	plus	ABC25563
JLOC1	JLOC1_53305.3	2714	8e-25	1903 - 1962	100	60 / 60	plus
JLOC1	JLOC1_53305.2	2865	8e-25	1903 - 1962	100	60 / 60	plus
JLOC1	JLOC1_53305.1	2805	8e-25	1903 - 1962	100	60 / 60	plus
Harvest21	ABC25563	1207	3e-25	494 - 553	100	60 / 60	minus	ABC25563
Harvest35	U35_10913	1207	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (1207 bp)

>U35_10913 1207 Hv_44K_v2
GTCCTGAGATGATAATCAAAGATGTTGGTGGATTATGAGATTTTTGGTCTAGTAGATGAG
CATGATGATTATTTTGATGGATAAACTAATATTTAATTTAGTTTGGAAGAATTTGGATTT
AATTAGGTGATTGTGATCTTTTGACCAAATTTTACGGTGTATTATGAGGTTTTGGTTGGA
GTTAGTATGTGATTGGGATGTTGACGAACTAGTAAAAGATATTCGGTAGATTATGTGAAT
TTAGGTTTAGTAGGTGAGCATGTTGGTTATTATTTTGGATTTAGTTAGGCGATTGTGATC
TTGAACCAGATTTTATGGTGTATTATGAGATTTTTGATGGATTAGTTAGTTGATTGTGAT
CTTGAGGAGATAGTCAAAGATGTTTGGTACATTAATTAATATTGAATAATTTCAATTTAG
TTAGGTTATTGTGATATCAAACCAAATTTCTCTATGATTTATGAGATTTTAGTTGGATTT
AGTCAGGTGATTGTCTTGAGAAAATAGTCAAAGATGTTTGGTGGATTATGAGATTTTAGG
TCTAATAGATAAGCATGGTGATTATTATATTGGTGGACATATGAATCTTTAATAAATGTG
ACACAATTTGGATTTGGTTAGCCGACTGTGATCTTGAACCAAATTTTATGATGGATTCTG
AGATTTAATTCGGCTGAGCTCCTCCTATTCCTTGAGGAGCATGCACAATGTCGTGGTGTG
GCAGCTTGTGCGACGTGTGTTGGCCTCAAAAGGCGGGCGCCGACACCTGCAGCTTGTGGG
CAATGGCGACTCCACGCATCGCTTGCACCCTACAACCCTCTCCTTCCCGGCACAGCAGGA
GCAGGAGCAAGGATGCCTAGGCGGTTCAGGTGAATTGTGCTTTAGGTTCAATGACCAATT
TTATTGCTAAATATTTTTCTCTCTGAAAGTGTCAAAGAATATACAACTTGCTATGGAGAA
GTTTTCGTATGGAGAAATAAAGATTTATGCAGAACTATTTGGGCTCCCGCAGCTGTATCG
TCGCGAGGAAGAGTTGGAAGATCAGGCAGAGAGGGTTTCACATACCTCTTCTCCAAAATC
AACCAAGAAACCTCCAAAGACGCACAAGAGTTAGATATATCTTGCTGTTTATTAAAGTCA
GACAACTGATAATGAAGTTAATCAATATATAGTAATGGATATAATTCTTCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_10913 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None