- Probe CUST_39174_PI390587928
- Source Contig U35_10924
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39174_PI390587928 | Hv_44K_v2 | GAAGTTGATGCGCAAGAAAAACGGATACGAAAGGAACTCGAGAAGCAAGTTGTGTTGAAG | 337 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.212 | 2.442 | 1.188 | 0.725 | 0.385 | 0.320 |
| Raw | 3974.760 | 4541.590 | 2015.127 | 1810.612 | 353.190 | 328.585 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59486.1 | 2350 | 7e-23 | 441 - 500 | 98 | 59 / 60 | minus | ABC22994 |
| JLOC1 | JLOC1_38714.2 | 6554 | 4e-23 | 1815 - 1874 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_38714.1 | 5808 | 4e-23 | 1069 - 1128 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC22994 | 467 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | ABC22994 |
| Harvest35 | U35_10924 | 468 | 3e-25 | 338 - 397 | 100 | 60 / 60 | plus |
Contig Sequence (468 bp)
>U35_10924 468 Hv_44K_v2 TTCAAATTCGAGGATATCTTCCCTGTCTACAGGATCCCGCTTACTCCATGGTGCTGATAA AGCATCTACCTATGCATTTGATGGTCAAGTATCTGGTTCTAGCCATTTAAATCAACATGG AAAACCATTGATCTCCCTGTCAGGGTCCACAGATTATGAGATGGCTTCATCAAATATTGA CGCTAGTCCTGCTCCAATCGAAGGCCAGTTTGGCGTTACTCAGGTTGTTGGATTTCATAA TCCCCTTCCATCCTCTGAAGGAGTGGATTATCACGATGAAGATGCGTATCAACTGGATAA AAAGCGGAAACATAATGAAGAATCGAAGATTGCGAAGGAAGTTGATGCGCAAGAAAAACG GATACGAAAGGAACTCGAGAAGCAAGTTGTGTTGAAGAAAAAGAGAGAAGAACCAATGCG GAAGGAAGTGGAGAGGTATGATCGTGAAAGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_10924 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |