barSeed - Barley Seed Development Database

Probe CUST_39172_PI390587928

Source Contig U35_10926

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39172_PI390587928	Hv_44K_v2	CTACGACTACTACGACGAGGAAGAGGAAGGGATCGAAGGCGACGAGGGGAGCGACTACGA	344	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2470.1	1358	7e-23	528 - 587	98	59 / 60	plus	ABC09529 ABC09804
JLOC1	JLOC1_1479.2	1506	4e-23	456 - 515	98	59 / 60	plus
JLOC1	JLOC1_1479.1	1515	4e-23	462 - 521	98	59 / 60	plus
Harvest21	ABC22372	477	3e-25	345 - 404	100	60 / 60	plus
Harvest35	U35_10926	477	3e-25	345 - 404	100	60 / 60	plus

Contig Sequence (477 bp)

>U35_10926 477 Hv_44K_v2
TTGAATTTCTGTTTCCTTTTCGTCCTCCCCTTCTCCTTCTCGTCTCCGATCCCTAACCGC
TCCTTCTCTCCCTCCCCCATGGAGGGCCCCAAGGGAAACGGCGGCGAGAAGCCCAGCGCG
GACCAAAACCATAGCCCCAATACTCCCGCCGCAGCCGGGGCCGGAGGGGACGACGTGTCG
GCCGCGGCGGCGGCGGCTGTAGGGAGGCGGCCGTTCACCGCCTTAAGCCAGGAGGAGGCC
GACCTCGCCCTCGCGCGCGTCCTCCAGGAGCAGGAGCGGGCGTACATGATGCTGAGCGCG
CACGGCGGGGACGGCAGCGAGTACGATGCCTCGGACGCTGGGAGCTACGACTACTACGAC
GAGGAAGAGGAAGGGATCGAAGGCGACGAGGGGAGCGACTACGAGGAGGAGGGGGTACTA
CCCAACGATGACGACGAGGAGGTGGGCGACGCGGAGGGGGCCGAATTGGACCCCGCG

Homology of Contig U35_10926 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None