barSeed - Barley Seed Development Database

Probe CUST_39168_PI390587928

Source Contig U35_22901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39168_PI390587928	Hv_44K_v2	CTGCTATAGATATTTAGCAAGTCATGGTACGTGATACTGGAAATGCATACTGGTTTATCT	853	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.911	3.268	1.360	0.514	0.102	0.083
Raw	971.465	1676.176	608.365	369.402	25.789	22.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59074.1	396	7e-23	337 - 396	98	59 / 60	plus	ABC19772
MLOC	MLOC_59075.1	2614	7e-23	17 - 76	98	59 / 60	minus	ABC19772
JLOC1	JLOC1_38416.1	2118	4e-23	2045 - 2104	98	59 / 60	plus
Harvest35	U35_22901	913	3e-25	854 - 913	100	60 / 60	plus

Contig Sequence (913 bp)

>U35_22901 913 Hv_44K_v2
TTGTCTATGCTCGATGATTATAGGATAGTNTCTTGAGAGAAAAGGAGCAGGAAAAGAAGA
CGCAAAGGGATCAGAAGAAGCTTGAGGATCGATTCAAAGCCGAGCAGGAGACACTGTATG
GATCAAAGCCAAGCCCTGCAAGGTTAAATAGCGGGAACAAGCTTACCAGAAACTCCTCGG
GAATTGCAAACCGGAGGCTGTCTGTCGGCGGAGGACCAGTGCGAACTCCTATTTTATTGA
CACCTCAGTCAAGATTCGTACGTTCAGCCAAGAAGACAGAAGATAGTGGCACGCTCTCCC
CTGGTAGGAGAGGCAAAGGCACTGCCAACCCTCGATGCAAGCAGTTATCTTTCAAGGCAA
GTACTCTTGGTGAGACTGAAACTCTTCGCAAACCCTTCACGCAGATCGCACCCGGAAATA
GCATCCCATCGACACCCGTGCGGTCTGCCTCCAATAGTACCGAAGGCGAGAACAGAACTC
CCAAAATACTCGCAGCACCAACTCCTAAGACGCCGATGATGGTGATCTCTCCTATGCAAA
TGTCCACAACGCCTGCTCTGACTGCCGCAAGAGCTGCACCTATCTGCGTCTCCAATGACA
AGCCGGAGCTGTGTTTGCTAGAGGGCACCGAGTACTCCTTTGAAGAGAGGCGTCTTGCCT
ATCTCGCTGCGCACGCCGCTTGACTCTTGGGGAATGCCGGGGAATGCAGGGTAGGTTGCT
GAAAGTATGTCATCTGGCATGGCAAGGCGTCTCTTGTGGGAGACGCTTGGCTTAGTTGAT
AAAGACACATTTTTTTTTGTATCGAAGTCACAGCCATATGTCATGCTGGCTTAGTTGGCT
GGATTGCTGGCTTCTGCTATAGATATTTAGCAAGTCATGGTACGTGATACTGGAAATGCA
TACTGGTTTATCT

Homology of Contig U35_22901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49200.1	690	6e-61	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi2g46800.1	689	9e-61
Arabidopsis v10	None