- Probe CUST_39161_PI390587928
- Source Contig U35_22909
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39161_PI390587928 | Hv_44K_v2 | GACTACTTACAAGAATTGAGGGTTTGAGAGCATTCCTTCCCAAATTTGAGCTCATGGACA | 622 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.372 | 2.091 | 1.226 | 0.660 | 0.339 | 0.263 |
| Raw | 71.299 | 85.558 | 49.224 | 38.698 | 6.867 | 5.939 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361990 | 1850 | 2e-24 | 791 - 850 | 100 | 60 / 60 | plus | ABC22334 |
| MLOC | AK361192 | 1389 | 2e-24 | 650 - 709 | 100 | 60 / 60 | plus | ABC22334 |
| MLOC | MLOC_68561.1 | 863 | 2e-24 | 115 - 174 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68561.2 | 1773 | 2e-24 | 101 - 160 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_68561.3 | 1632 | 2e-24 | 101 - 160 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_45372.4 | 1042 | 8e-25 | 687 - 746 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45372.3 | 1023 | 8e-25 | 668 - 727 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17911 | 682 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22909 | 682 | 3e-25 | 623 - 682 | 100 | 60 / 60 | plus |
Contig Sequence (682 bp)
>U35_22909 682 Hv_44K_v2 CTGCTCCCTCTCATCTCGCCGCCTCCTCCGCACTCCCTGCACGTCGCCAAAGCTCTCATA CCCAGGCAGACCCATGCCTTGGCCCGGGCCCGGGCCCGATCCGTTGCCCCCACCATGTCT GCTCAGCTAGATGCCGCCCTTTCTGCCGGCTTCGTCCGTCTCCTCAACGCCGGCCAGGAG GACGCGTACCGCGGCGGCGGGCACTACGACCCGAAGTCGGGGGACTACGCCGTCGGGATC GTTGTCTCTGGCACCGAGGCTCGCCTCGACGTCGCCGTTGGCGCTGACCGCCTCGCTACG CTCCTCACTAAGGAGCTCCTCCCGCTTTGCCGCGCCGAGTTCCCCACTGGAGGTGTTAAA CCGGTTCCGCCTCGGCCAGGGAGCGTGGGCGTCTTGGAGGCCTCCCCCATGGATGAAGAG ACCCAAAATCAGAAGCGCGGGGCCAGGACGCTGGTGCCGCCCGGCACGGTGGTCTTCGCG GAGGTGCTCGGGCGCACACTGAGCGGGCGGCCGCTGCTGTCGGCGAGGCGGCTCTTCCGA CGCCTCTCGTGGCACCGGGCAAGGCAGATTATGCAACTTGACGAGCCAATTGAGGTTAAA ATTTACGAGTGGAATACTGGTGGACTACTTACAAGAATTGAGGGTTTGAGAGCATTCCTT CCCAAATTTGAGCTCATGGACA
Homology of Contig U35_22909 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g40640.1 | 439 | 1e-70 | protein|S1 RNA binding domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g42220.1 | 428 | 7e-88 | |
| Arabidopsis v10 | None |