- Probe CUST_39160_PI390587928
- Source Contig U35_10930
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39160_PI390587928 | Hv_44K_v2 | AGAACCTTCCAATTCAGAACGAACCTTCCAATGGCGGCAGAGCCCACCAAAAGCGACGCC | 42 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.503 | 1.478 | 2.229 | 0.990 | 0.580 | 0.672 |
| Raw | 19.100 | 22.662 | 38.558 | 26.506 | 4.018 | 6.324 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20592.1 | 289 | 2e-24 | 184 - 243 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_14276.1 | 263 | 8e-25 | 158 - 217 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22993 | 441 | 3e-25 | 43 - 102 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10930 | 442 | 3e-25 | 43 - 102 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_10930 442 Hv_44K_v2 TCCATTTCCGCCTCCCGGTCGAGTCCGATCTGACATCAACTCAGAACCTTCCAATTCAGA ACGAACCTTCCAATGGCGGCAGAGCCCACCAAAAGCGACGCCCACGTCGTGGAGATCCCG GTCACCGGCGACGGAGCGGGCGCGTTCCCCTGCAAGGCGGCGGCGGCGGCGGCGGCGTCG GGGCACCACCCGCTGGGCGAGATCGCCGACAGCGGGGGCCACCTGCTTCTGCTCAAGCTG TGGCAGCGGGAGGAGTCCCGCCTCAACCGCCGCGCGTGCGCGCTCGAGGCGGTCATGGAC GCGGCGCGCCGGGACGCCTTCTACCTCTGCGCGGCCTTCCTCGCCCTCCACGGCCTCTCC CTCGCGCTCCTCTTCGCCGCCTCCGTCGCGGGCGGCTCCTCCGCCGCGCTCCCGTCCCGC GCCTGCAGGAGGTGGTGGGCGC
Homology of Contig U35_10930 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |