barSeed - Barley Seed Development Database

Probe CUST_39157_PI390587928

Source Contig U35_47093

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39157_PI390587928	Hv_44K_v2	TTTCCGACCTCTGTTCGTTCACAGACGTTTATGCAAATGCTTGTAGTTTGTGATAAAAAA	11	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	1.932	1.405	0.984	0.414	0.329
Raw	112.928	292.155	183.288	203.760	30.000	25.621

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_47093	700	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (700 bp)

>U35_47093 700 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCACAAACTACAAGCATTTGCATAAACGTCTGTGAACGAACA
GAGGTCGGAAAATGAGTATTCAACGGCTATATTCTCATGATATGTGGTGTTTTACATCTC
TGTGTAGTTATGGATCGAACGACGGAACTTCGCTGTTGAACCCCTGGGAAGCCATGAACA
TTAGCCTCCGCGAGATCTTCCTATACTCGTCCTCCTCCCGCTTATCTAGCAGGTAGGAAA
TGATGCCTTGCACCTCCGATTTGATGTGTGTGTAAAGGTCCGTCGCAGCGCGCCGGTCGG
TGAGGACGTCCTGCCTCCCCCGCGTCGGGATCGGCTTCCCGAACCGGTAGTAGAACCGGC
CCGGGATCTTGAGGAACACGCCCGGGAAGATCACCTCGTGCTTGGCATCCCTTAACTTCA
GATGCTTACTGTACGCCCGCATTATCTCCCTGCCAAAAGGCATGCTCCGGATATTGTCGA
ATGTACAAAGCAGGTTCAAGAGGTCATCCTCTCCGACGACTCCAAACGGCACGATTGTGG
CATTCAACTGCGCCGCCATCCTAACAAATTCAGTCTGGTCTGGCCAGAAAATCCTGTGCT
CTTCACCCTTGCAGTGGATTGCCTCCCTGTAACCACCTGNGTAGAGGAGCACGAACTCCC
CGGCTGCCAGCAACTCGTATACATACTTGTAGGTCATGGG

Homology of Contig U35_47093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g26000.1	665	4e-100	protein\|expressed protein
Brachypodium v1_2	Bradi2g12870.1	664	5e-106
Arabidopsis v10	AT3G26840.1	701	2e-52	Esterase/lipase/thioesterase family protein \| chr3:9892808-9896154 FORWARD LENGTH=701