barSeed - Barley Seed Development Database

Probe CUST_39150_PI390587928

Source Contig U35_9949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39150_PI390587928	Hv_44K_v2	TTGCGGGTATCTTGGAATAAAGCATATACTCATGTGTGAATAAAGCATATACTCATGTGT	645	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.645	2.589	1.263	0.666	0.267	0.203
Raw	115.425	159.193	75.221	61.261	7.906	6.536

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51494.2	3262	2e-24	68 - 127	100	60 / 60	minus	None
MLOC	MLOC_51494.3	2795	2e-24	61 - 120	100	60 / 60	minus	None
MLOC	MLOC_51494.1	3348	2e-24	88 - 147	100	60 / 60	minus	None
JLOC1	JLOC1_32900.1	3208	8e-25	3065 - 3124	100	60 / 60	plus
Harvest35	U35_9949	726	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_9949 726 Hv_44K_v2
CATAATGCATAATGAGTCGCGGGACCATCTCATAACGGCGTTGATGAAAGCTTCCTTTGA
TGGGTTCCTGCTGGTGCTTCTTGCTGGTGGACCTACACGTGCCTTCACACTTCAAGACGC
TCAGATCATAGAGAATGATTTCAGAGCTCTCAGAGGATTGTACTTAGCAAATGGTGATGG
CCTGCCACATGAACTTGTTGACAAGGCTTCACTGGAGGTGAAAAGCGTTCTGCCACTATT
AAGAACGGACACAGAGTCCCTCATCCAGCGTTTCAAGCAAGCGATTACTGAACTTCAGGG
ATCTCCAACCAAATCTAGCTTCCCGAAGCCTCCTCGTGTGCCCGCCCAGTGGAGTGCAAA
TGACCCGAACACTATCCTGCGAGTTTTGTGCTACCGGTACGATGAGGCGGCCACAAAGTT
CCTCAAGAAAACATACAAGTTTCCAAAGAAGCTTTGATTTGTGTATGTCTGCTGCCTATC
GCCTATGCAAAATTGAGGTAATAAGGAAACGCTTCCAGTTCTCATGTTTGTGCTGCCACC
GCGTGAAGAAAAAATTAAGTAGTCAGATTGTGTGTGTGTGTGTGTGTGTTCATAAGACGA
GTTATTTTTGCCGATCCTGGAGTTTTTGTAGGCGTGTCAGCTTGCTTGCGGGTATCTTGG
AATAAAGCATATACTCATGTGTGAATAAAGCATATACTCATGTGTGAATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_9949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g17760.1	986	2e-52	protein\|expressed protein
Brachypodium v1_2	Bradi3g34737.1	971	2e-60
Arabidopsis v10	None