- Probe CUST_39146_PI390587928
- Source Contig U35_9951
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39146_PI390587928 | Hv_44K_v2 | GCGTGTTGTGAAGACTGAAGAATGACCTGACCTTTTATATACTAGTATCACATTTGAAAT | 279 | GeneList: lightsteelblue1 MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 24.825 | 9.559 | 1.330 | 0.730 | 0.148 | 0.214 |
| Raw | 4500.947 | 3007.254 | 337.242 | 313.047 | 22.088 | 33.728 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_43352.1 | 1288 | 8e-25 | 1138 - 1197 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19220 | 364 | 3e-25 | 280 - 339 | 100 | 60 / 60 | plus | ABC19220 |
| Harvest35 | U35_9951 | 364 | 3e-25 | 280 - 339 | 100 | 60 / 60 | plus |
Contig Sequence (364 bp)
>U35_9951 364 Hv_44K_v2 TTCGACGCGAGGAGCTACTACCAGCACCAGGTGAACATGCTGCAGGACGCCGCGGCGGCC TCCTCCTCCTCGCGCTACTCCCAGTCGTCCCAGCCCCAGACGGCGGCGGCGGCGGCGGCG GCCACCGCTCTTCACCTCGGCTACGAGATTAAGGGGGGGCAGGCCCAACTGAACTGAACT GAACTGGATGACCTACGTCTACTTAGTTACCACAGTACTGTATTGCGGTATGCTACCTAA ATAATTGCGTCATGTGTGCCATGCGACTCGAGAGCGTGTGCGTGTTGTGAAGACTGAAGA ATGACCTGACCTTTTATATACTAGTATCACATTTGAAATTTGTGAACAAAAAAAAAAAAA AAAA
Homology of Contig U35_9951 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |