barSeed - Barley Seed Development Database

Probe CUST_39140_PI390587928

Source Contig U35_9957

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39140_PI390587928	Hv_44K_v2	AAATGAACTAAATGTAGCCTGACTGTCTACATCATGATGAACACAGCTGGGGTTTAAGAG	728	GeneList: turquoise MasterList: Cell_cycle_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.554	1.711	1.250	0.742	0.270	0.207
Raw	766.704	1306.683	824.184	777.039	98.031	82.403

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC51307	411	8e-21	345 - 400	98	55 / 56	plus
Harvest35	U35_9957	809	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_9957 809 Hv_44K_v2
GGCAGCCTCGGCGGTGTTCCTGGCAAAATGGACACTTGACCAATCAGACCTGCCATGGAA
CTGTATTCTCGAGCATTACACCTCATACAAAAGTTCCAATATCGAAAGATGCGTACGCGA
TCTATGGGAGCTGCAGCAGGGCAACACCAGCGGGAGTCCCCCCCTCAATGCTATACGCGA
GAAGTACCGGCATGAAAAGTTTGAATGTGTAGCCAACATGCTGTCGCCGGCCATGCCTGT
GTCGCTCTTCCGTAGGCAAGCTAACGACACCACCCCCTTGCTGATCAACGACTCCTAGCA
GCACAGCATCAGTCCCCTGCTGATCAACAGCTTGATTTTTTTCGAAGATCTTGTAGCATC
CCCTTCCTCCCCCCGATCTGTCTGTGTTGTGTTTTGCTCTCCTCCTGAGCTGAGCTGTTG
TTTTTTCCCGACCTTTTTCGAGTCGTGCAGTCGTAGGCGATGGCTCGCATAAATGTTGAT
TTGAGTTGGCGTGTAGGCTGCTGATGGATGTGCCTATGGCTGGTAATTGTATGATGATGA
TCCTGTCTGTCTGTATGATAACTGAGTGAGTGCCGCTTGATTTAACGTAGGTTTGGGCGC
CTTTCCTAGAGTCTAGTGTGTGCTGTGCAATTGCAGTGCTCTTGACATTAGAAGAGCACC
TGAGTCCAGGATGGTTGATTTGATGTAACATGTTGTTACAAGAAGATACTTGTTGTTGCT
TGGTTTGTAAATGAACTAAATGTAGCCTGACTGTCTACATCATGATGAACACAGCTGGGG
TTTAAGAGCGCCCTCGAGCTCTCTAGAGG

Homology of Contig U35_9957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None