barSeed - Barley Seed Development Database

Probe CUST_39133_PI390587928

Source Contig U35_9966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39133_PI390587928	Hv_44K_v2	CCTTTTTGTACGTGTGTGTAGCAGCGTTTGTAACAGTTTCTCGCAGCTTGTAGTTCCTTT	815	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.764	2.020	1.107	0.773	0.236	0.303
Raw	608.882	1100.324	525.210	595.092	63.573	85.973

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363018	2356	2e-24	2266 - 2325	100	60 / 60	plus	ABC23538
MLOC	MLOC_18347.1	1553	7e-23	42 - 101	98	59 / 60	minus	ABC23538
MLOC	MLOC_18347.2	849	7e-23	42 - 101	98	59 / 60	minus	ABC23538
JLOC1	JLOC1_12697.4	838	4e-23	755 - 814	98	59 / 60	plus
JLOC1	JLOC1_12697.3	806	4e-23	723 - 782	98	59 / 60	plus
JLOC1	JLOC1_12697.2	823	4e-23	740 - 799	98	59 / 60	plus
JLOC1	JLOC1_12697.1	772	4e-23	689 - 748	98	59 / 60	plus
Harvest21	ABC23538	928	3e-25	816 - 875	100	60 / 60	plus	ABC23538
Harvest35	U35_9966	925	3e-25	816 - 875	100	60 / 60	plus

Contig Sequence (925 bp)

>U35_9966 925 Hv_44K_v2
GCACCAGCATAACATAATCCATAGAGATCTGAAGACTGCAAACATTCTCATGGGCGACAA
TCATGTTGTGAAGATTGCAGACTTTGGTGTGGCTCGACTTGGTAGTCAGGAGGGACAAAT
GACGGCTGAAACTGGAACTTACAGGTGGATGGCACCCGAGATTATTAACCATAAGCCTTA
TGATCACAAAGCGGATGTATTCAGCTTTGCTATTATTCTGTGGGAGTTGATTACATTAAA
GGTCCCTTATGATAACATGACACCCTTGCAAGCTGCATTGGGAGTGAGGCAGGGGTTGCG
CTTGGAGATCCCGGCAAGTGTGCACCCGGGATTGTCTAAACTGACCGAACAGTGCTGGGA
TGAAGATCCTGATATAAGACCTGTTTTCACGGAGATCATTATACAACTTGAGGACATCTT
ACAGCAGATTCAGGTGCCCAAGGGAGGCCATCGACGTTCTAGAGCAAAAATGCAAAAGAA
ATCACCACGATAGAAGAAAGAAAAGAAAAGAAAAGAAACCGAATTTATAAATTGCTAAAA
GAGCGATAAAGCACCGACAACCATGCCAAAGGTTTCAACTCCCCTATACGGCATGATCGG
TTTAGCAGGGCTCTGGAGGGGTCAAAGGGGTTTAACTGGGCTAAATCCCTAGAGATACCT
GGGTTTAACTGGATCAAAGAGGTTTCCATCCTTGCACTATGGTGGCATCAGAAAGCTGAA
ACTAGAAAGATCACCTGGTAGCTTTGTGCAGTCTCTCCAATTCCAACAGGACGCCGACAT
GCCGTTGTGTGATAGGGTTAGAATGTCCTCTCATTCCTTTTTGTACGTGTGTGTAGCAGC
GTTTGTAACAGTTTCTCGCAGCTTGTAGTTCCTTTTTTTCCATTTGAAGAGGTAGTTCCT
TTTTCCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_9966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01270.1	536	7e-75	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi3g13060.1	555	1e-73
Arabidopsis v10	AT4G35780.1	570	5e-55	ACT-like protein tyrosine kinase family protein \| chr4:16946729-16950405 REVERSE LENGTH=570