barSeed - Barley Seed Development Database

Probe CUST_39131_PI390587928

Source Contig U35_9968

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39131_PI390587928	Hv_44K_v2	GCGGCATCGCGGTGGTTGAATTTAAACAAACACTCCAAATTTTAACAAAACTGTTGAGAT	31	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.273	1.564	1.280	0.869	0.371	0.294
Raw	404.562	778.110	549.992	581.999	87.039	76.395

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368554	3497	2e-24	3406 - 3465	100	60 / 60	plus	None
MLOC	MLOC_5739.1	3875	2e-24	322 - 381	100	60 / 60	minus	ABC39491
JLOC1	JLOC1_3708.2	3791	8e-25	3484 - 3543	100	60 / 60	plus
JLOC1	JLOC1_3708.1	2571	8e-25	2264 - 2323	100	60 / 60	plus
Harvest35	U35_9968	678	3e-25	32 - 91	100	60 / 60	minus

Contig Sequence (678 bp)

>U35_9968 678 Hv_44K_v2
ACAAAAAACACGAGCATTTCTCATTATAATGATCTCAACAGTTTTGTTAAAATTTGGAGT
GTTTGTTTAAATTCAACCACCGCGATGCCGCAGCTTATAAAAGTAAACAACAATGAACTC
CACGCTTGAACTACTCGACAGAGACCTTCTACTAAGGGACCCACCATGGAGCTGTTGAGA
TGCTCAATCAGAGAATGAACACAAACTACTGTGTCAGGGGCAAGCCAGGTTGAGGTGCCT
TCAGCTGATTGGGTGCCAAAAACCTCCCTTTGCCACTTGTGTCTTCTTGCTTCTCTAGCT
TCACAAAGTTAGAGCGGTCAATGGTTGTCATTTGCAGTCACAAGCTGCTCCGCATATGAG
AAACCCTCTTTATACAAGAGAAGAATCCAAACTGTTCAATGATTGTCATCTAATCGACAA
CTTTAGTCTTTGGTGAGCTGCTATTCTCAACAGAAGTGGGATCCGGTCGAGCAGAAATGG
CCACCTGTAGGTTTTCAACTGAGGGCCCATCTGACTGCATGGCATTATTGAACGGCATGG
CACTATTGTTCTTGCTGGCTCCATTTCCACGGGCAAAGGAGATGCAATCAACAAGCCGTG
AATATTCATCAACGGTCCCTTCAGCCATGTAGCGGCCGCTCGAGCATCATCTGGAAGGCC
CAATTCGCCCTATAGGAG

Homology of Contig U35_9968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None