barSeed - Barley Seed Development Database

Probe CUST_39130_PI390587928

Source Contig U35_9969

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39130_PI390587928	Hv_44K_v2	AAGGCCATGGAAAGCCAGTCCAAAATCGCCTTCAAGCTGTTGCCTATAGCTGATGAAACT	476	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.167	0.271	0.757	1.680	1.663	2.572
Raw	3.131	11.582	31.740	102.445	37.822	63.822

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371513	1840	7e-23	395 - 454	98	59 / 60	plus	ABC14290
Harvest21	ABC18884	536	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_9969	536	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_9969 536 Hv_44K_v2
ATGTGGCCGCCCCTAATCGCCGTCTGCCACGTGCCATATCCCGGATACCCTCTCCAAAAC
CTCTCGCTCCAGAACGCAGCAGCAGCAGCAGCAGCAGCAGCCTCCTCCTCCTCCGCTCTT
CCCTAGGCAGCTAGCCTCTCCGCCTCCCTCCCCTTCCGGCCAGCCAGCTCGCAATTCCCG
CAACCGGCGCTGCCGCGGGGGCAATGGAGTCCACCGGCGCCGCCATCTCGGCGCCGTTCG
GCTGCCGCGCGTTGCGCTGGGCCGGGCAGCGGCCTCTCCGGGCGGCCGATGCCAGGAGAA
GGCGGGTGAGTCCAGGCCCCGGGGCGGAGCAGTGGAGGAGCTTGAAGGCGAGCTGCGTGG
CCACGGAGAAACCCGACGAGAAGGCGGCGCCGGGGCTGGGGGTGGACTTCGCCGACGAGG
AGGACTACGTCAAGGGCGGCGGCGGTGAGCTGCTCTACGTGCAAATGCAAGCCACCAAGG
CCATGGAAAGCCAGTCCAAAATCGCCTTCAAGCTGTTGCCTATAGCTGATGAAACT

Homology of Contig U35_9969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None