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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39128_PI390587928Hv_44K_v2AGGAATGCTTCAAGACGCACAGCACGCTCAACCCCAAGCAGAAGACGGCGCTGGCGAACC445GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4361.1320.9060.5951.0780.872
Raw 9.76111.0477.8046.9944.1623.593



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35906012107e-23462 - 5219859 / 60plus ABC21171
MLOCAK36523815343e-21517 - 5769758 / 60plus ABC21171
MLOCMLOC_43512.15213e-21250 - 3099758 / 60plus ABC21171
MLOCMLOC_34121.12053e-2125 - 849758 / 60plus ABC21171
JLOC1JLOC1_28134.15252e-21256 - 3159758 / 60plus
JLOC1JLOC1_22016.11882e-2110 - 699758 / 60plus
Harvest21ABC238385986e-22428 - 4879758 / 60plus
Harvest35U35_99727053e-25446 - 50510060 / 60plus



Contig Sequence (705 bp)

>U35_9972 705 Hv_44K_v2
ATCACCACCACCGAGCACTGCCACCGTACGAACCATCGTCCATCCTCCCAGTCCGGGGCG
CGCGCTCTCAGATCGGATCGGGTACGCCGGAGACAAGAGACGATGATGCATCGCGCCGAC
GGCCTCGACCTGGGCCTCGGGCTGGGGCTCGGCCTCGCTTCCCAGGGCAGCCTCACGTCC
TCCACCACCACCGCCGCATCCTCCTCCCCGGCCTCCGCCTCCCACTCGCAGCACTGGACC
GCCGCGCTCAGCTCCGTCATCGGCTTGCGGAAGGAGGAACCGGGGGTGCAGGCGTCCACG
TCGCCCGAGAGCGGCGGCACAAAGAGGGGCCTGGAACGGACCGGCTCCGGCCTGGCCGCG
GGCAGCGACGAGGACGACGACGGCGGTGATGGCGCCGGCGGGCGCAAGAAGCTCAGGCTC
TCCAAGGACCAGGCCGCCGTCCTCGAGGAATGCTTCAAGACGCACAGCACGCTCAACCCC
AAGCAGAAGACGGCGCTGGCGAACCGGCTGGGCCTCCGGCCGCGGCAGGTGGAGGTGTGG
TTCCAGAACCGCCGGGCGCGCACCAAGCTCAGCAGACGGAGGTGGACTGCGAGTACATGA
AGCGCTGCTGCGAGCAGCTCGCCGAGCAGAACCGCCGCCTCGAGAAGGAGGTAGCCGAGC
TCCGCGCGCTCAAGGCCGCGCCGCCGGCGCACAGCGCGGCAGCAG



Homology of Contig U35_9972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None