barSeed - Barley Seed Development Database

Probe CUST_39123_PI390587928

Source Contig U35_9977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39123_PI390587928	Hv_44K_v2	ATTGATGAAATTGATGCGATTGGTGGGCGCAGACAGGAAAAAGGTTCATCGTTGGATAAG	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72099.4	2274	2e-24	1052 - 1111	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.1	2354	2e-24	1124 - 1183	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.8	2104	2e-24	956 - 1015	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.9	1915	2e-24	780 - 839	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.6	1989	2e-24	854 - 913	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.3	2528	2e-24	1242 - 1301	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.7	2400	2e-24	1026 - 1085	100	60 / 60	plus	ABC06621 ABC31830
MLOC	MLOC_72099.2	2371	2e-24	997 - 1056	100	60 / 60	plus	ABC06621 ABC31830
JLOC1	JLOC1_47962.3	2385	8e-25	977 - 1036	100	60 / 60	plus
JLOC1	JLOC1_47962.2	2404	8e-25	996 - 1055	100	60 / 60	plus
JLOC1	JLOC1_47962.1	2495	8e-25	1087 - 1146	100	60 / 60	plus
Harvest21	ABC21315	1025	3e-25	543 - 602	100	60 / 60	plus
Harvest35	U35_9977	1025	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_9977 1025 Hv_44K_v2
GAAACAAGTTCAAAATGCTAAATCGAGGCGTTTCAACTGCAGCAAGGGCGGAAGGCCATG
TTCTTGGTACACATAGTGCACCCTATTACATGGTAGAGAAAGGCCTACTTAAAAAGCAGC
TTCTGCGTACTTCTGGAGGCCTTGTAGTTGCTGGCTTTGCGGTCTATGCAATCGGTAAAG
TGGAGGAAGCAATGGCTGGCAAGTTTGAAGGTTTGAAAGCAGTGCCTAGGGATTTGACCA
CAAAACTCAGTGACGTAAAGGGGGTTGATGAAGCCAAAGCTGAGCTCGAGGACATAGTTC
ACTACCTACGAGATCCAAATCATTTCACACGCCTCGGTGGTAAGCTTCCAAAGGGTGTTT
TGCTTGTAGGCCCACCCGGCACAGGGAAGACCATGTTGGCAAGGGCTGTGGCCGGGGAAG
CCGGCGTCCCTTTCTTTGCGTGCAGCGGCAGTGATTTCGAGGAGCTCTATGTTGGTCTTG
GGGCTAAAAGAGTGAGAGAGCTCTTTCGTGCAGCAAAGAAGCAGTCTCCTTGCATAATAT
TCATTGATGAAATTGATGCGATTGGTGGGCGCAGACAGGAAAAAGGTTCATCGTTGGATA
AGCAGACGCTGAACCAGCTGCTTGTTGAGATGGATGGCTTCAAGCAGAATGGCGGGATAA
TTGTGATTGCAGCGACAAACTTCCCCGAGTCATTAGATAAGGCCCTTGTCAGGCCTGGGC
GTTTTGACCGTCAAGTCCATGTAAATATTCCAGATGTTAAGGGCCGACGGCAGATCCTCG
AGGCATACATGTCAAAGGTGTCTACAGCCGAGGGTGTGGATGCAACGACCATTGCAAGGG
GGACGCCTGGGTTTTCAGGTGCAGACCTTGCAAGCCTAGTGAATGATGCCACTCTCAAGG
CTTCCAAGGATGGGGCAAATGCTGTTGCAATGGATCACTTTGAGTACGCCAAGGACAAGA
TCATCATGGGCAGTGAGCGCAAGTCCATGGTGATGTCTGCTCAATGCAGGAAGATGATCG
CATAC

Homology of Contig U35_9977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39260.1	716	1e-121	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g41610.1	705	1e-123
Arabidopsis v10	AT2G26140.1	717	7e-118	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717