barSeed - Barley Seed Development Database

Probe CUST_39121_PI390587928

Source Contig U35_9979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39121_PI390587928	Hv_44K_v2	CCATCTACAGAAGGATTCTTCTTATGATATTCCCTTTTCAGGCAAAATATGGAGAAATCT	233	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.278	1.046	1.007	0.406	0.421
Raw	104.512	159.054	114.649	178.476	24.702	27.930

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67565.3	1190	2e-24	467 - 526	100	60 / 60	minus	ABC23733
MLOC	MLOC_67565.1	1622	2e-24	561 - 620	100	60 / 60	minus	ABC23733
MLOC	MLOC_67565.2	1543	2e-24	546 - 605	100	60 / 60	minus	ABC23733
JLOC1	JLOC1_44628.2	1593	8e-25	940 - 999	100	60 / 60	plus
Harvest21	ABC23733	812	3e-25	520 - 579	100	60 / 60	minus	ABC23733
Harvest35	U35_9979	812	3e-25	234 - 293	100	60 / 60	plus

Contig Sequence (812 bp)

>U35_9979 812 Hv_44K_v2
GGTGACTCGCAGTTCAGCAAGTTAAGGCGATGGTGGAAAAATATTGATATTTTTAGGATA
CCATACCTCCTTTTGCCAATTCATGGACAGATGCATTGGAGCTTGGTCATTATCTTCATG
CCTGCAAAAGAGATAAAATGCGGGCCAAGAGTGTTTCACTTGGACTCTCTAGGAATACAT
TGCAGTGACAAGGTTTTTGGTGTGATTGAGAGCTACCTCGTAGAAGAATGGCGCCATCTA
CAGAAGGATTCTTCTTATGATATTCCCTTTTCAGGCAAAATATGGAGAAATCTTTCAAGA
AATATAAATAAGGAAAAAGTCGAGGTTCCACAGCAGCAAAACGACTTTGACTGTGGTGTC
TTTATGCTTTACTACATCGACAAGTTTATTCAAGAGGAACCAGATAGTTCGACAGGAGTG
CGGCCTTTCAAGTTTGGACGCAAGTGGTTCAGCCCTGAAGAAGCTTCGGCGCTGCGGAAG
CGAATACGAGTTCTCCTGTTTGAGATATTTCAGAATGCTCCACGGAATGATCGAAATTTA
GAGTCACATGACGATGATCACTCGGAAGATGAAGAAGATAAGGTTAGGGATACAATCATG
ATCGTTTGAATGTAACGGTGAATGAATGAAGTCAAGCAATGGAAAGATCACGGTGCAGTT
TTGCATCAGAACACTGTCTCTGATGGCTGTAGATGCGCTAAGGGTCCCAATTTTGTGTAT
ATGCTGTTTTGTGGACAAAGTTTGAAAGCTATAACGATGCAGCAAAGCTGACCGATATAT
CTTATATTTTCGGTAGCACAAAATATCTGTGC

Homology of Contig U35_9979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41380.1	726	2e-57	protein\|ulp1 protease family protein, putative, expressed
Brachypodium v1_2	Bradi4g02360.1	670	9e-59
Arabidopsis v10	AT1G10570.1	571	1e-52	\| Symbols: OTS2, ULP1C \| Cysteine proteinases superfamily protein \| chr1:3487639-3491102 FORWARD LENGTH=571