- Probe CUST_39117_PI390587928
- Source Contig U35_9983
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39117_PI390587928 | Hv_44K_v2 | TTGGGAGAAAATATGGCACATCTTGTACACGACGAGAAAGTGCTCAAATAAATACCTCTC | 315 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 9.627 | 4.143 | 1.583 | 0.350 | 0.055 | 0.068 |
| Raw | 38114.433 | 25040.033 | 8619.380 | 2908.844 | 175.609 | 232.332 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC25447 | 406 | 3e-25 | 316 - 375 | 100 | 60 / 60 | plus | ABC25447 |
| Harvest35 | U35_9983 | 406 | 3e-25 | 316 - 375 | 100 | 60 / 60 | plus |
Contig Sequence (406 bp)
>U35_9983 406 Hv_44K_v2 GAGGGCTATATAGCTTTGGACGCTGCAAGTGGAACTCAAGGGGGAAAATGAAGAGCCGAT TTTGCCCCCTTGTTTTCATCTTCCTTGTGGTCTCTCTATGTTCCTTACCTGCACTAGGTA TACGCCATGGAAGATTTCAATCAGTGAACCATAGGGACCTGTCTCCAAGTCCCAGCTTGA CTGAAACTCATGCTTCTCTGGTACAAGGCCGTGCGTTTGAATCATTGATCTCGGTGGACT ACAGTGGTGTAGAAGGACACCCACCCCAGATACATGCACCTAAGTTAGTAGAGCCGCCTC CGTCTGATTAAAGCCTTGGGAGAAAATATGGCACATCTTGTACACGACGAGAAAGTGCTC AAATAAATACCTCTCATTTTTATTATTATAAAAAAAAAAAAAAAAA
Homology of Contig U35_9983 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |