barSeed - Barley Seed Development Database

Probe CUST_39108_PI390587928

Source Contig U35_6000

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39108_PI390587928	Hv_44K_v2	ACTGAGCACTTGAATCCAATAAAATTGCATGTCTCGCGGTTGGGGACACCCATCAAAAAA	1968	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.891	1.962	1.186	0.738	0.192	0.170
Raw	173.632	280.975	149.256	145.420	13.064	12.532

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13144	2039	3e-25	1969 - 2028	100	60 / 60	plus	ABC13144
Harvest35	U35_6000	2039	3e-25	1969 - 2028	100	60 / 60	plus

Contig Sequence (2039 bp)

>U35_6000 2039 Hv_44K_v2
AGGGGATTTGGAGAGCTACTTGGAGGCAGTGGATATTCTGAAAGGAATCTCCCGCTTCTT
TTCCTCGAATAAGAACTTCAGAAGCAGTGAAGGAATTCTGAATCACGTCAACGGTCTGTT
AGCGAAGTCTTCTCTGAAGATCGAAGAAGAATTTAAGCAGCTGATGAGTACGTACAGCAA
ACCAATTGAGCCCGATCGTCTCTTTGATTGTCTACCCAAGTCTCTGCGGCCATCAAAAGA
CGACACTGAGCCTGGGAACGATAACCAGTCTGACCATCCATCCAAAGGCTTGGAAACTGC
TGTATACAGGACCCCGACACTAGTTCCTCCAAGAATACTGCCACTCATGAATGACATAGC
TCAGCAGTTGGTTCAGGCTGGAAATCAACAGTCATGCTACAAAATTTACAGAGAATCCCG
TGGTTCAGCACTAGAGTTGAGCCTTCGGAAGCTGGGAGTAGAAAAACTTAGTAAAGATGA
CGTGCAAAAGATGCAATGGGAGGCTTTGGAGGCTAAGATTGGAAACTGGATACACTTTAT
GCGTATTGCGGTTAAACTACTACTAGCTGGAGAAAGAAAAATCTGCGATCAGATTTTTGA
GGGTGTCAACTTTAACAAGGACCAATGTTTTGCAGAAATGGCAACAAATAGCGTTGTGAC
TCTTCTCAGCTTTGGAGATGCTGTTGCCAAAAGCAAAAGGTCTCCTGAAAAGCTGTTTGT
ATTGCTAGACATGTACGAAGTAATGCGTGAACTTCAATCAGAGATTGAGGTGGTTTTCGA
AGGAAAGGCTTGCTCTGAGATGAGAGAGGCTGCATTGGGCTTGACTAAGCGCTTGGCACA
AACTGCTCAAGAAACCTTCGCTGATTTTGAGGAGGCAGTTGAGAAGGATGCTTCAAAGAC
TATCGTTCAAGATGGAACTGTCCATCCTCTGACAAGCTATGTGATTAATTATGTTAAATT
CCTATTTGATTATCAGTCGACGCTGAAGCTTCTGTTTCAGGAATTCGAAACTGGTAGTGA
GACAGAATCTCAGCTTGCTGTTGTTACTATGAGGATAATGCAAGCACTACAGAATAACCT
AGATGGAAAATCGAAACAATATAAGGATCCTGCGTTGACTCACTTATTTCTTATGAACAA
TGTTCACTATATGGTTAGATCTGTACGCAGATCAGAAGCAAAGGATATACTTGGCGATGA
CTGGATTCAGAGGCACCGTAGAATTGTGCAGCAAAATGCCAATCAGTACAAACGTGTTGC
TTGGGCAAAGGTTCTTCAGGCACTTTCCGTACAAGGTGCGCCAGGCAGCACTGGTTCGTC
AACACCAGCAGACCTTAACAGCAGCGGAGTTTCAAGAGCTGTGGTCAAAGAACGGTTTAA
AGCATTCAATACGCAATTTGAAGAACTTCACGCGAAGCAATCTCTATGGATTGTACCTGA
TCAAGAATTGCGTGAATCCTTGAGGCTTGCTATAGCTGAGGTTCTGTTGCCAGCCTATCG
ATCTTTCATAAAACGTTTCGGCAATCTTGTTGGGAGCGGCAAGAATCCGCTGAAGTACAT
CAGATACAGCCCCGAACTGGTGGACAAACTCCTGGGCGAGTTCTTCGAAGGGCAGCAATA
TGGCGAGCCGAAGCACCAGCATCGCCTGTAAGGTGTCTGCGGCATCAAGTTCCAACCCCA
CAGAGATCCCTGTCAAAGCACACAACTAACGATCCCTTTGCACAGTAGCAGCAATGCTGA
TCATCATATACTAGCAATATAGTGACCACCACAGAAAAGAAAAGGGTTTGCTGTTTCGTA
GTCTCAGTGGCTCACATGGCAGGCTAACAGTGTAAAGGTGTCGTCCTTCAAACTACCAGC
CTTGTTCTATCATAATATATGAGATGCTGTTCTATCATGTTAACCCTCAGATTTCATTAC
TTAGAATATATTTCATTGATATAGTAGATTTCATTATTTTCACCTGTTACTGAGCACTTG
AATCCAATAAAATTGCATGTCTCGCGGTTGGGGACACCCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g05880.1	644	protein\|exo70 exocyst complex subunit, putative, expressed
Brachypodium v1_2	Bradi4g24960.1	648
Arabidopsis v10	AT5G52340.1	631	\| Symbols: ATEXO70A2, EXO70A2 \| exocyst subunit exo70 family protein A2 \| chr5:21250802-21253939 FORWARD LENGTH=631