barSeed - Barley Seed Development Database

Probe CUST_39105_PI390587928

Source Contig U35_6002

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39105_PI390587928	Hv_44K_v2	CACATAACTAGTCGTTCTCATGTTATATCTTCCAGACCATGACAAATCTATCTATTGAAG	1153	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.622	1.679	1.139	0.643	0.202	0.178
Raw	446.963	695.047	435.768	394.835	43.017	41.415

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368921	1343	2e-24	1264 - 1323	100	60 / 60	plus	ABC10075 ABC21012
JLOC1	JLOC1_12274.1	1195	8e-25	952 - 1011	100	60 / 60	plus
Harvest21	ABC21012	702	3e-25	549 - 608	100	60 / 60	plus	ABC21012
Harvest35	U35_6002	1307	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1307 bp)

>U35_6002 1307 Hv_44K_v2
CACGCGTCCGGAGCCTGCCCGTCTTTGATTCGGCTCAACAATGGAGATGGTTTTGGCCGC
ACCGGAGGAGCCGCGCCCGGTGCGCCTGGGCATCATGGGCTGCGGCTCCATCGCGCGCAA
GGTCGCGCGCTCAATGCTGCTCGTCCCCGCCGCCGACGTGGCCGCCGTGGCCAGCCGCTC
CGAGGGGAAGGCGCGCCTCTTCGCCGCCGACAACGGCCTCCGGAGCGGCACGCGCATCCA
CGGCTCATACGAGGCGCTCCTCGACGACCCGGACATCGACGCCGTGTACATGCCGCTCCC
CACCAGCCTCCACGTCAAATGGGCCACCGCCGCCGCCGAGCGAGGCAAGCACCTGCTCCT
CGAGAAGCCCACCGCGCCCTGCGCCGCCGACCTCGAGCGCATCCTCGCCGCCTGCGAGGC
CAACGGCGTCCAGTTCATGGACTCCACCATGTGGATGCACCACCCCCGCACTGCCAAGAT
GCGTCAGCTCGTCGCCGATCAGGACACCATCGGAGACGTCAGATTTATAAACACCATGGT
CAGCTTTCTAGCAAACGAAGATTTCCTCCAGAATGACATCAGGGTAAAGCCGGACCTTGA
TGGCCTGGGTGTGCTGGGTGATATCGGGTGGTACTGCATCCGTGGAATCCTGTGGGCTGT
TGACTATGAGCTGCCCAAGAATGTGGTTGCTCTCCGTCACCCTGTCAAAAACCAAGCTGG
CGTTCTGCTTGCTTGCGGCGCGTCGCTCTACTGGGCCGACGGCAAGGTCGCCACCTTCCA
CTGTTCTTTCCTTACCAACCTGACCATGGACCTCACCGTCGTCGGCACCAATGGTACTAT
TCATGTCACCGACTTGGTCATTCCGTACGAAGAGAAGTCTGCTCCGTTCAGCGTCGCCTC
CAAGACAAACTTCGCCGAACTCTCAACTGGATGGGATCCACATCCGAGCAAGCATGTTGT
CACGACGGACCTACCCCAGGAGGGGCTCATGGTCCAGGAGTTCTGTAGGCTGGTGCAGAG
CATCAGAGATGCGGGTGCCAAGCCTGAGGGGAAGTGGCCGGGCATCACCCGAAAGACACA
GATTGTCGTGGATGCAGTGAAGACTTCTATTGACAACGGATTTGAGTCGGTCGTTGTTGC
CAGCTAAATACAACACATAACTAGTCGTTCTCATGTTATATCTTCCAGACCATGACAAAT
CTATCTATTGAAGTAATTTGAAAGATTCTTATCATATTGAGGATAGTATTGCAACGATCA
AGTAAGAGTTATTAAGAATTTTTGTTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6002 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26400.2	255	5e-107	protein\|uncharacterized oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi1g07560.1	367	0.0
Arabidopsis v10	AT4G09670.1	362	9e-132	Oxidoreductase family protein \| chr4:6107382-6109049 REVERSE LENGTH=362