- Probe CUST_39104_PI390587928
- Source Contig U35_9994
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39104_PI390587928 | Hv_44K_v2 | CTGTAATTCCCCTTCTTTTCAATACAAAGAAACGCAACTCTTTGCCTTTTCTCGAAAAAA | 276 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.979 | 1.899 | 1.485 | 0.822 | 0.553 | 0.393 |
| Raw | 115.044 | 164.247 | 119.061 | 97.211 | 23.869 | 18.861 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69754.1 | 4166 | 2e-24 | 3316 - 3375 | 100 | 60 / 60 | minus | ABC19255 |
| JLOC1 | JLOC1_46243.1 | 380 | 8e-25 | 268 - 327 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC19255 | 347 | 3e-25 | 277 - 336 | 100 | 60 / 60 | plus | ABC19255 |
| Harvest35 | U35_9994 | 347 | 3e-25 | 277 - 336 | 100 | 60 / 60 | plus |
Contig Sequence (347 bp)
>U35_9994 347 Hv_44K_v2 CAACATCCAGAAAAAGACCTTGTGCTTAGGTTGACAGGAGCTATTCCGAATCTACTGAAA ATGGGTGGAATAACTTGTGTACCCAGAAGGACCTTGTATGCTTTAGTAGAAGAGAATCAG GAATTTCCTCCGTCGCTCTCCGAGCTCTCGGATAGGATCAAAGATGAGATGAGGTGTTGG GCTAGAGCCGGGGACAAGGGGCTTAGGGTAGTCTTGCCCCCATCCTGGGATGTCCATTAA ACTCCTTGTAACCTGCTGTAATCACCTCTTAGGAGGCTGTAATTCCCCTTCTTTTCAATA CAAAGAAACGCAACTCTTTGCCTTTTCTCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_9994 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |