barSeed - Barley Seed Development Database

Probe CUST_39102_PI390587928

Source Contig U35_9995

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39102_PI390587928	Hv_44K_v2	GATCCGTGACTATATCGAGTTGGACTTTGCTATCATGTCAAACAATGAAAAGTGATGTCC	250	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.544	0.499	0.937	1.856	1.855	2.921
Raw	2399.680	3532.954	5626.570	15437.450	6341.833	10705.630

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37217.1	365	2e-24	263 - 322	100	60 / 60	plus	ABC19907
JLOC1	JLOC1_24072.1	352	8e-25	266 - 325	100	60 / 60	plus
Harvest21	ABC19907	414	3e-25	251 - 310	100	60 / 60	plus	ABC19907
Harvest35	U35_9995	414	3e-25	251 - 310	100	60 / 60	plus

Contig Sequence (414 bp)

>U35_9995 414 Hv_44K_v2
GGAGAATCAGAAGTTTGAGCCTGACATTATGGAGGGGAAACCTATTCTTCTTTGCCTTGT
GGTGCTTGTCCTGCTAGGAGATTCAACTCATGCTCGGTGCCATGAGGAGCGTGCTTACTG
GATACCTTTGTATTGTCTAGATGAAAATTTTTGTCAGAACAAATGCGTGAAGAAGTGGGG
AAAGCTCGTGAAAGAATCTTATTGTAAAATGACCGGGTTTTTCATAGTCTCTTGTTTATG
TTTTGTGTGTGATCCGTGACTATATCGAGTTGGACTTTGCTATCATGTCAAACAATGAAA
AGTGATGTCCAGTAATAAAACATTATTGTGAAATGCATGTGAAACAATGAAAAGTGATGT
CCAGTAATAAAACATTATTGTGAAATGCATGTGANNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_9995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None