barSeed - Barley Seed Development Database

Probe CUST_39101_PI390587928

Source Contig U35_9996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39101_PI390587928	Hv_44K_v2	ACGAGATCTAGTCCCCTCACTATTCCTCTGAAGCGTTGTTTTCCTTCTTATTTTTGAATT	479	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.102	1.214	1.179	1.032	0.377	0.471
Raw	183.926	329.556	269.126	373.600	48.216	64.054

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58430.9	1689	2e-24	58 - 117	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.3	2493	2e-24	580 - 639	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.4	2685	2e-24	580 - 639	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.11	3033	2e-24	51 - 110	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.10	2509	2e-24	51 - 110	100	60 / 60	minus	ABC20947
JLOC1	JLOC1_37958.2	2452	8e-25	1853 - 1912	100	60 / 60	plus
Harvest21	ABC20947	592	3e-25	54 - 113	100	60 / 60	minus	ABC20947
Harvest35	U35_9996	592	3e-25	480 - 539	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_9996 592 Hv_44K_v2
AAGCACAGTGTCAGCCATGGCCGTGGACGGGTGTAGGATTATCACCTCAGGGATTAGTCC
TACCAGAGGCAGCCTGTTACACCACAAAGACTTTCTGAGATCCTCAGTTCCTGTAGCTTT
ACCTGGCAAGGAGGTTTCCAAGTTCTGGGGGCCTCAAGAATATGACGACGAAGACTAGCG
TAAATTATTAGCAAAAAGGTAGCATTACATACAGGATGAGATTTTGAGAGCCCATTCCTT
ATGCTAAGCTGGTGCATATCTTTCTCTTAGCCTTTCCATGCTAAGGTTTATTAAAAATAG
GGGAGCGTCTTTGCAAATGGGCCTGCACTATGCATGCAGGAAGGATACTAGCAATTTGTT
TGTAAGGCATCATCTGTAGCTACATACATCAGCATGAACCTTTGTGTAACTAGTGGTGAC
AGGATAATCATGTTGTTCTCTTCACCATAGAATTACAGTGGATAGGGTTTCTAAAAAAAA
CGAGATCTAGTCCCCTCACTATTCCTCTGAAGCGTTGTTTTCCTTCTTATTTTTGAATTT
TTGCTGACAATCGTATTACCATTGTAATATTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None