barSeed - Barley Seed Development Database

Probe CUST_39100_PI390587928

Source Contig U35_6004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39100_PI390587928	Hv_44K_v2	TTCCAGGTCTACGGTCAAAATAATCTTCCATCAAAATACAGGTCATGCTTGCAGTACGGC	823	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252056.1	3334	2e-24	2950 - 3009	100	60 / 60	plus	None
MLOC	MLOC_73156.2	1010	2e-24	592 - 651	100	60 / 60	plus	None
JLOC1	JLOC1_48687.2	3227	8e-25	2590 - 2649	100	60 / 60	plus
JLOC1	JLOC1_48687.1	3678	8e-25	3041 - 3100	100	60 / 60	plus
Harvest21	ABC17716	982	3e-25	824 - 883	100	60 / 60	plus
Harvest35	U35_6004	1343	3e-25	824 - 883	100	60 / 60	plus

Contig Sequence (1343 bp)

>U35_6004 1343 Hv_44K_v2
GAAACACTCCTATTTTCTGCTACAGTTCCAGATGAGGTTCGTCAAGTATGTCATGTTGCC
ATGAAAAGAGATCTTGAATTTGTGAACACTGTTCAAGAAGGAAGTGAGGAAACACATTCA
CAGGTGAAACAAATGCATTTGGTTGCACCACTCGACAAACAATTCTCTATCCTATATGGT
CTTCTAACGGACCATATTTCGGAAAATGTTGACTACAAGGTGATTGTGTTTTGTACAACA
GCAAAAGTAACAAGTCTTGTTGCTGAACTCCTGTCTGAACTGAAGTTGAACGTACGTGAG
ATCCACTCCAGAAAGCCACAAAGTTACAGAACCAGGATATCAAAAGAATTTAAGGAATCA
AAGGGTCTTATTCTTGTTAGTTCTGATGTATCTGCTAGAGGTGTTGATTATCCTAATGTC
ACACTAGTTCTGCAGTTGGGAGTTCCTAGTGACAGGGAGCAATATATCCATCGTCTTGGT
AGAACTGGCCGCAAAGGTAATGAGGGGAGCGGTGTCTTATTGTTGGCACCATGGGAAGAA
TACTTCTTGAGAAGTATCAAAGATTTGCCTATTACAGAGGCAACACTACCACTAATTGAT
TTGGACACTAAACGGAAGGTTGAGAAAGCGCTTGCACATGTGGAGGTGAAAGATAAGGAA
TCTGCTTATCAAGCATGGCTTGGTTACTATAATTCGAATAAGCAAATCGGCCGTGATAAG
TACCAGCTTGTATCGCTGGCTAATGAGTTCAGTAGAAGTCTGGGCCTCAACAACCCTCCA
GCACTGACTAAGCTTATCCTTAAAAAGATGGGACTGAGCAACATTCCAGGTCTACGGTCA
AAATAATCTTCCATCAAAATACAGGTCATGCTTGCAGTACGGCGAGCTTCCACATTACTT
GTTTTCAGTCTTTCCTTGTAACATGAAAACACACCTTAAATGCATGTCCCTACAAGTATA
TGCCGTGTTGCATATCCCGGACAAGAGTTTGACTATGGTGAACTATTAGCAAGTTCGCTA
GGCATCTGGGAAACAGTATCAGAGTTGGCTCTTGACCTGAACTGGTGATTCTGCCCCCCT
TCATATTTAGAGTTCTGTTTCAGTTTCAGTTCAGCCATTTCTTGTATTTGGCGATGTCGC
CATGATGAGAATGTTTCCTAGGTCACAAATTCAGTATAGCATGAAAGGAACAAAGTAGTT
TCTTTAACAATATTCAGGCTTATTAGATAACTAATACCACACCTGATCCCATGTTTGCGA
TGTACTCCTTTCGTTCCTAAATATAAGTCTTTTTGGAGGTTCCACTAGTGAACTACATAT
GGATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g33520.1	924	9e-180	protein\|DEAD/DEAH box helicase, putative, expressed
Brachypodium v1_2	Bradi1g38660.1	887	2e-180
Arabidopsis v10	AT5G63630.1	788	2e-143	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:25472598-25476402 REVERSE LENGTH=788