barSeed - Barley Seed Development Database

Probe CUST_390_PI415269222

Source Contig TA30997_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_390_PI415269222	Hv_44K_v2	AACCACAATTAAGTCACACATTGGGTGATTATACACGTGCGTAAATTAAGGGCATGGTTG	851	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367749	907	7e-23	732 - 791	98	59 / 60	plus	ABC03151 ABC03152 ABC03155 ABC03156 ABC03157
Harvest21	ABC31451	394	3e-25	204 - 263	100	60 / 60	plus
Harvest21	ABC03156	416	1e-23	226 - 285	98	59 / 60	plus	ABC03156
Harvest35	U35_14955	1034	1e-23	842 - 901	98	59 / 60	plus

Contig Sequence (1035 bp)

>TA30997_4513 1035 Hv_44K_v2
NATTCGGCACGAGGAGGAACACAAGACAAGGAAATCAATAAGATGGCATCCTCCTGTTCC
TTCCTTCTCCTCGCTGCTCTTCTTGCGTTGGTCTCATGGCAGGCAACTTCCTCCGACCCT
AGCCCACTCCAAGACTTTTGTGTGGCCGACATGCATTCACCAGGTACAGTACGGCTTCTT
ACCATGCTTTCACCAAATACATATGCTGAAATTAATTTCTAAAAATTATATGCATGTTCA
TATCACTTCCTAGTAATACCCAAGCTTACACTCTACATCTCCTCTATTCACCGGTGCGTG
TAAATGGGTTTGTTTGCAAGAACCCTATGGATGTAAACGCTGATGACTTCTTCAAGGCAG
CCGCCCTCGACAAGCCTAGGGTGACAAACAAGGTTGGCTCCAACGTCACCTTGATCAACG
TCATGCAGATTGCTGGACTCAACACCCTCGGCATCTCAATTGCGCGCATCGACTATGCTC
CCTTGGGTCAGAACCCGCCACATACGCACCCTCGCGCCACTGAGATCCTCACGGTACTCG
AGGGGACACTGTATGTCGGATTTGTCACATCCAACCTGCCTGCACCCAACAGAAACAAGT
TCCTCTCGAAGGTGCTCAACAAAGGTGATGTATTTGTCTTCCCCGTGGGGCTCATTCACT
TTCAGTTCAACCCCAACCCCCACCAGCCCGCTGTTGCAATTGCCGCGCTCAGCAGCCAGA
ACCCAGGGGCTATCACAATTGCCAATGCAGTGTTTGGGTCAGACCCAGCAATATCAGATG
ATGTTCTTGCCAAGGCGTTTCAGGTGGAAAAGAATACTATAGACTGGCTCCAGGCTCAGT
TCTGGGAGAACAACCACAATTAAGTCACACATTGGGTGATTATACACGTGCGTAAATTAA
GGGCATGGTTGAGTTCCTAGATATGCATCCTAATTTATAAAATAAAAGGAGCATATGTAA
TTGTATGCCTGTAATCAGTGAATGTATTTCTACCTTTTAAATAATCAAAAATATCGTTTT
TTATCACAAAAAAAG

Homology of Contig TA30997_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08990.1	225	1e-107	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g17330.1	226	7e-110
Arabidopsis v10	AT5G39110.1	222	5e-63	RmlC-like cupins superfamily protein \| chr5:15657802-15658584 REVERSE LENGTH=222