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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_39092_PI390587928Hv_44K_v2GTATGTTTTTTCTTTGGTTGGTGACGTTGGTCTTGGACTGTTTGTCCTCCTGTTGGCTTT548GeneList: sienna3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.9152.0151.1850.7620.3430.534
Raw 1857.3501943.8171037.420999.889169.588284.951



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3608096512e-24499 - 55810060 / 60plus ABC10135 ABC10136 ABC13405
JLOC1JLOC1_44641.27588e-25631 - 69010060 / 60plus
JLOC1JLOC1_44641.17858e-25658 - 71710060 / 60plus
Harvest21ABC134056032e-22549 - 60310055 / 55plusABC13405
Harvest35U35_60106303e-25549 - 60810060 / 60plus



Contig Sequence (630 bp)

>U35_6010 630 Hv_44K_v2
TTCCAATTGACCGCCACCTTTGCGAAGTGTCCACCATGGCGTGCGGCGGCGGCGGCGGCA
TTTTCAGCAGGGCGCTGGGCTACGTCGTCAACGAGTTCCTCGTCCAGGGCCTCGCCAACA
ACCGTGCCTTCCAGAGGTTTGCTGTGAGCACCAACAGGACTTTCGAGAATCTCTCATCTA
GAGTTAAACAAGTCAGGGAGGAGGTGTCAGAGCAAATGAGGGATTCTCGTGGGCATGATA
ATCGCTTCAAGCAGTGATGTCGACTCCTAGGCGTGCATCAAGTTGCTAACTGTACAATCC
TGCTATCAGCGTTCCCGGTCATCTTTTCTTGTCCTGTTTTTGGATGCCATCCTCAAGAGG
CCCTTGTATAGAATCTGAATCCAAATGATTTTACTTTCTACGGAGAATGTTTTTATAGAA
AGAACTGTCTAGAGAGCATTATTTCCTAAATGCCATATATTAAAGTGGGATTCTTCTACT
CCCTCCGTTCCTAAATATAAGTCCTTTAGTGAAATCTCTAAAACGACTTATATTATGGAA
CGGAGGGAGTATGTTTTTTCTTTGGTTGGTGACGTTGGTCTTGGACTGTTTGTCCTCCTG
TTGGCTTTGCTCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_6010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None