barSeed - Barley Seed Development Database

Probe CUST_39091_PI390587928

Source Contig U35_6011

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39091_PI390587928	Hv_44K_v2	ATTTTTCGCACTCCACCTTGTAGCACATCCTGTGTTCTTCTTCTTCGGATGATCACCTAG	39	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375971	1856	2e-24	1461 - 1520	100	60 / 60	plus	ABC13990
MLOC	MLOC_3714.1	1863	2e-24	611 - 670	100	60 / 60	plus	ABC13990
MLOC	MLOC_3713.5	2547	2e-24	1394 - 1453	100	60 / 60	plus	ABC13990
MLOC	MLOC_3713.2	2612	2e-24	1459 - 1518	100	60 / 60	plus	ABC13990
MLOC	MLOC_3713.4	2410	2e-24	1160 - 1219	100	60 / 60	plus	ABC13990
MLOC	MLOC_3713.1	2867	2e-24	2330 - 2389	100	60 / 60	plus	ABC13990
MLOC	MLOC_3713.3	2828	2e-24	1576 - 1635	100	60 / 60	plus	ABC13990
JLOC1	JLOC1_2236.2	2364	8e-25	1150 - 1209	100	60 / 60	plus
JLOC1	JLOC1_2237.1	3407	8e-25	1156 - 1215	100	60 / 60	minus
JLOC1	JLOC1_2236.1	2786	8e-25	1572 - 1631	100	60 / 60	plus
Harvest21	ABC13990	423	3e-25	40 - 99	100	60 / 60	minus	ABC13990
Harvest35	U35_6011	1034	3e-25	40 - 99	100	60 / 60	minus

Contig Sequence (1034 bp)

>U35_6011 1034 Hv_44K_v2
TCCAGTCCAGAGCAGCATACCACAGTTCCCAACAGGGGGCTAGGTGATCATCCGAAGAAG
AAGAACACAGGATGTGCTACAAGGTGGAGTGCGAAAAATGCGGCAAGATCACCTGGAAGG
GGTGCGGCAAGCATGTCGCCTCCGTCTATGAAGACATCGAGAAAGGAAAGCACTGCACCT
GCAAGGCGTGGCCGGGTGTCGACACCGAAGGGTCGACTTCCAACACCAAAGAAGGTGAAT
CAAAGGCTTGAGTTCTTGCACACGGATCACTAGTTTTGCAACCACTGGACTGAAGGAGGC
TGCACTTTTGAATAAAAACTTGCCTCTGCTATCTGCTCTGTATTTGTTTTTGACTTCTTC
GCAGAAGTCAGTTTCGATGATCTAATAAAAAAAAAATCTTCAGTTGAAAAAAAAAAAAAA
AAATTGATGATGTTATCCAGCTAAAGAAGCAAATCAGGGCTGGGTTCCAGAGAGAGCTGG
AAAAACTCAGCAAACTCTTTGATCAATGATTCATAAGCTATATCCATTAATTNTGCGTCG
TTAAGTTCTCTACCGCTGGAAGCCTTTTGTAAGATCTGCTTTATGCTCCCAACGCTACGT
CCCTTTATGCCACAGGGAACAATGTGCTCGAAAGGGGTTAGGTCAGTTGTGACATTTAGC
GCTAGACCATGATATACTATCCATCTTGCGCACATAATTCCAATAGCTGCAACTTTCTGG
TCACCAACCCAGACACCGGTGAGGCCGTCTATTCTTGCTGCCTTGATAGAGAATGCAGAC
TGAAGAGCGCGAATGATCACACCTTCAATTGACCTTTGGTACCAGACAAGATCCTTCTTC
TGATGCCGCAAATTGAGAACCGGGTACAGAACAAGCTGTCCAGGACCATGATATGTCACC
TGCCCAGCACGATCGATACGATGAATCTCAATAGGAGAATCTTCTAAATTGAAATTGAGG
TACTTCTCATCGTTGCCGTTGCCCAACGTATAAACCGGTGGATGTTGCAGCGCGATCAAG
GTGTCCGAGTGATC

Homology of Contig U35_6011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40450.1	306	4e-93	protein\|biotin--protein ligase, putative, expressed
Brachypodium v1_2	Bradi3g06440.3	300	1e-99
Arabidopsis v10	AT1G47578.1	280	2e-79	Biotin/lipoate A/B protein ligase family \| chr1:17484365-17485470 FORWARD LENGTH=280