barSeed - Barley Seed Development Database

Probe CUST_39089_PI390587928

Source Contig U35_6013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39089_PI390587928	Hv_44K_v2	CTAGTGACCAGTTAGTTGTTGATGATGGATCATAAAACTGTGGATGAACTAGACAATGTT	1308	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.502	1.556	1.318	0.883	0.334	0.279
Raw	1511.560	2463.558	1833.463	1901.614	255.728	230.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367463	3714	2e-24	3647 - 3706	100	60 / 60	plus	None
MLOC	MLOC_58386.3	3688	7e-23	3327 - 3386	98	59 / 60	plus	None
MLOC	MLOC_58386.4	3932	7e-23	3552 - 3611	98	59 / 60	plus	None
JLOC1	JLOC1_37928.1	3608	4e-23	3441 - 3500	98	59 / 60	plus
Harvest35	U35_6013	1406	3e-25	1309 - 1368	100	60 / 60	plus

Contig Sequence (1406 bp)

>U35_6013 1406 Hv_44K_v2
CCTGCCGGAAGCGCCGCCCAGGCTCAAGTGACAGTGCCTGAAACTGGTGGTTTTCAGGTA
GACATGAATGTGGAATGTGTTGGTGTTGTAGATGTGCCTGTCGCAGTTGTCCAGACGGAA
GCAATGGACCTGGAAGCTAATATTCCTGTGGTAGATATGAATGAACAAGTTGCTGCTGTG
GCAGATGTGCCTGCTGCTACAAGTGGTTTGTTGCTTCCTACGTCCCAGCCTGCAGCTGGA
AACAAAGACAGCGCAAGTGTGCAAGTGCGTGCAGCCCAAGAGTCCTACACATCTCTGATT
CAGGCGATGCTGCCGGAACCATACAAGAAAGTGGAGGAGGTGTCTGCTGGAACAGGTGTC
GTCGCGGCGCCTCAAGGTGAGGCTCAAAAGGTTGAACAGACTAGCCAGAAGAAGGCAGTT
GCTGATGGAGGAGCTACTTTTGCAAACCATTCTTCTGCTGCAAAAGGCACTAGTGCTACC
AATGGGACCCCCTGCCCTGATGCACCCACCTCTGGCCAGAAGAGGAGGAACAAGAAGCCT
GCAGCATACTTTGCAAACCCAGCAGAGATCCGGGTGAAATTCAAGGGTGGCACCATGATC
CCGACCAAGGATGAGCTGCTCTCTGAGTTCCGCAGGTTCGGCGTCCTGGTGGAGTCGGAG
TGCGACATATCGGAAGAGCGCCGCGAGGCCCGCGTGGTGTTTGGGAAGAGCACGGAGGCG
GAGGCGGCCTACACCAAGGCGGAGATCCCAGGCATCTTCGGGCAGTTCGGGCCTCCCTGG
GCCACCCTGGGGCTCAACTACCTGGAGGCCATCACGCTTGTGCCCCCGGCTCCCAAGCCC
CCGCTGGCTCGTGCTGACATGAGGAAGAACGTGGAGAACATGATCTCGTCCCTGAAGAAC
GGGCGCTCTTTGCCCCTCAACATCGGAGCGGCGTTCCCGGCCGCCGCTGGAGGAGGAGCG
CCCGTGTCGGAGAGCCTCCTTGCTGAGATGCAGCGGCTCCTGTCCAAGCTCGACAAGACG
CAGCCGCCTCCTGGGCCTTCGGGCTCGGCTCCGCCGTCGTAGGCCCTCCCTGCCTGCCGT
AGTGATGGATGGATGGATGGATCTATGGGGCTTGTTGCTCCCTAGCTAGCTACTAGTTAT
TAGTGAAGTTGTTTCTGTTTGGGTCTAGGCAGGCATGCACGGACACACGGACGCATATGC
TGGATGAATGTCTTTTGTTGATTATTATTAGAGACGATGCTGCTGCTGTTGCCTTAGCTT
TAGCTTTATTTGGATTGGAGCTGTTGATGATGAAGTGAAGTGGATGAACTAGTGACCAGT
TAGTTGTTGATGATGGATCATAAAACTGTGGATGAACTAGACAATGTTATTTTGTCATCA
TCATCATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g44130.1	827	1e-51	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None