barSeed - Barley Seed Development Database

Probe CUST_39081_PI390587928

Source Contig U35_6021

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39081_PI390587928	Hv_44K_v2	AATCATACACTATATTGGTTCAATTTATCGCTGGGTGCTTCTGGCCCTCAAAGGCAAATT	641	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.924	1.722	1.131	0.876	0.476	0.519
Raw	3533.380	4952.810	2879.060	3452.317	673.366	787.646

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374878	2106	2e-24	2039 - 2098	100	60 / 60	plus	ABC08920 ABC18299
MLOC	MLOC_73620.2	2100	2e-24	2016 - 2075	100	60 / 60	plus	ABC08920 ABC18299
JLOC1	JLOC1_49017.1	2216	8e-25	2016 - 2075	100	60 / 60	plus
Harvest21	ABC18299	615	3e-25	556 - 615	100	60 / 60	plus	ABC18299
Harvest35	U35_6021	701	3e-25	642 - 701	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_6021 701 Hv_44K_v2
CTGCCACGCTGCTATTTTCAGATGAACTGAAGAATGAGGCAAATGATTTATTTAAGAAGA
TATGCTGAAGCNTGGATGCACTCTCTCATTTCCACTTTGCCCCAAAGCCGGTCATTGAGG
ATATGTCGATACAAGTTAACGTACCTGCTCTAGCAATGGAAGAGGTTGCACCTGTAGCTG
TTTCAGATGCCGCAATGCTTGCTCCCGAAGAAGTTTTTGAAGGTAAAGGTGATATTAAAG
AAGACGCGGAGCTTACACAAGCTGAGCGCAAAAGAAGAAGAGCCAACAAGAAGAGGAGAT
ACGCAGAATCACACAAGGAGAGGCCAGCCAAGCTGCGGAAAGAAGAAACATCAAATATAT
AGGAAGCTGCTGCTTACATGCTATGTATTGCAAACCTTTGGAGCTGGAGGGAGGTCCGCC
CCCAACAGTGCAGCTACTGCTTACATGCTATGTATTGCAAACCTTCCGTAATCTGATGCC
TGGCCTGCAATTTCAATGCTCTGATGTAGCCAGTTTTCGAGCTCTCATGTAGTGTAAAAG
CATTTCCTTTTAGAATTTTATAGGGGAGTGTGTGTTTTTCTTCTCGAGTAGCAGGTTAGC
AGTGGTGGAGAGAATAGAATTGAACTCTTGCGAGTAAAAAAAATCATACACTATATTGGT
TCAATTTATCGCTGGGTGCTTCTGGCCCTCAAAGGCAAATT

Homology of Contig U35_6021 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None