barSeed - Barley Seed Development Database

Probe CUST_39079_PI390587928

Source Contig U35_6023

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39079_PI390587928	Hv_44K_v2	GCATGGATGCAACTTTTTCCTTTTGAGAACTTGTTATTAGTAGAGCAGACTGTTATTCTG	1715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71233.3	1055	2e-24	92 - 151	100	60 / 60	minus	ABC15296 ABC23889
MLOC	MLOC_71233.1	2154	2e-24	191 - 250	100	60 / 60	minus	ABC15296 ABC23889
MLOC	MLOC_71233.2	1967	2e-24	191 - 250	100	60 / 60	minus	ABC15296 ABC23889
JLOC1	JLOC1_47321.1	1855	8e-25	1763 - 1822	100	60 / 60	plus
Harvest21	ABC50443	663	2e-21	12 - 70	97	58 / 60	minus
Harvest21	ABC15296	1792	2e-21	1716 - 1774	97	58 / 60	plus	ABC15296
Harvest35	U35_6023	1822	3e-25	1716 - 1775	100	60 / 60	plus

Contig Sequence (1822 bp)

>U35_6023 1822 Hv_44K_v2
GGAGATTGCAAGTTTCAATCATGTTGCCGGCCTGGTGGAGCCCTTTGTTGGGGGCGACAG
CGGCGCCGAGGAGACAGGAGGGCCAAAGGAGAGCCTGGTGGTGACCGAGGTGAAGAAGCA
GCTGTACCTCGCCGGGCCTCTCATCGCCGGATGCCTGCTGCAGAACGTCGTGCAGATGAT
CTCGGTCATGTACGTCGGCCATCTCGGCGAGCTCGCCCTCTCCAGCGCCTCCATCGCCAC
ATCCTTCGCGAATGTCACCGGCTTCAGCTTGATGTCTGGCATGGCGAGCAGCTTGGACAC
GCTGTGTGGGCAAGCCTTCGGGGCAAAACGGCCCCATCTGCTCGGCATCTACAAGCAGAG
GGCGATCCTTGTGCTCACTCTGGTGAGCGTCGTGGTTGCGGTGCTCTGGGCGTTCACCGG
GCAGATCCTCCTGCTCTTGGGCCAGGACCCGGAGATCGCCATGGGGGCAGGGAGCTACAT
CCGGTGGATGATCCCGTCGCTCTTCGCTTACGCGCTGCTGCAGTGCCACGTCCGGTTCCT
CCAGACGCAGAACATCGTCCTCCCGGCGATGGCGAGCTCGGGCGTCACGGCGCTCGGCCA
CGTTCTCGTGTGCTGGTTGCTGGTCTACAAGATTGGGCTGGGCAACAAGGGCGCTGCCCT
GGCCAACGGCATCTCGTACCTGACCAATGTATCGATCTTGGCTCTCTACATCAGGGTCTC
TCCATCCTGCAAGAGCACCTGGACAGGGCTCTCAAAGGAGGCGTTCCGCGACATCGTCAG
CTTCATGAAGCTTGCCGTGCCATCCGCGCTCATGGTTTGCTTAGAGTGGTGGTCGTTTGA
GCTGCTGGTACTTCTCTCCGGGCTTCTCGCAAATCCTAAGCTCGAGGCATCGGTGTTGTC
CATTTGCTTAAACACAACTGCATTAACATTCATGATCCCCTTCGGGCTTGGGGCAGCCAT
AAGCACCCGTGTTTCAAACGAGCTTGGTGCTGGGCGGCCTGAAGCTGCCCGTCTGGCTAC
CCGTGTGACCATGGTTCTGGGTCTCGTGTCGGGTGTGTCGTTAGGACTTATTATGCTCTC
GGTGCGCAATCTGTGGGGGTATGCGTACAGCAACGAGAAGGAGGTGGTGGAATACATTGC
GAGAATGATGCCGCTTCTTTCCGTATCGATCATTTTCGACGATCTGCAATGTGTTCTTTC
AGGTATTGTTAGGGGCTGTGGCTTGCAAAGGATTGGTGCTTGTGTCAATCTCAGCGCATA
CTACCTTGTCGGCATTCCAGCGGCGCTATGCTTTGCCTTCGTCTTCCACCTTGACGGAAT
GGGGCTGTGGTTCGGAATAATCTGCGGGCTAGTCGTGCAGATGCTGTTGCTGCTGGCCAT
TACCATGCGCACCAGCTGGGATAAAGAGGCTCTCAAGGCGAAGGACAGGGTTTTTAGTTC
GTCCCTACCTGTAGACATGACGACATGAACATGGAACAAGATGCACAATTGCTCTGGCTG
GGCAGAGGAGATGAGGAACTCGTGAGGAATTAATTGGTCCCCATGTCACCGGCATGGCGC
TTCCTCTAAAGGAAATGTCACCCAACGAAATGATCTGTTTTCGTGATTTTTTGTCGAAGA
CGTGAAAGATAGATCGGATGTTTCAGTTGATACGGTACAAGGGAATAAATCAATGAAGTA
AGAAATTTGGTGTTTACTAGAAAATCAAATCCACAGCATGGATGCAACTTTTTCCTTTTG
AGAACTTGTTATTAGTAGAGCAGACTGTTATTCTGTTGATTACAAGATATTACGTGGTTT
TGTCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_6023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11354.1	486	0.0	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi5g07160.1	482	0.0
Arabidopsis v10	AT5G52450.1	486	3e-162	MATE efflux family protein \| chr5:21289042-21291749 REVERSE LENGTH=486