barSeed - Barley Seed Development Database

Probe CUST_39078_PI390587928

Source Contig U35_6024

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39078_PI390587928	Hv_44K_v2	AAGAAGGAGGTGGCGGTCAACAGCTACTGGGGGATCGAGCAGTCGAAGAAGCTGGTGCGC	339	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.889	2.620	1.024	0.833	0.616	0.895
Raw	35.630	46.328	17.510	20.219	4.985	8.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363239	1412	2e-24	320 - 379	100	60 / 60	plus	ABC05887 ABC05888 ABC05890
MLOC	MLOC_53632.1	514	2e-24	166 - 225	100	60 / 60	minus	ABC05888
JLOC1	JLOC1_34473.1	1391	8e-25	291 - 350	100	60 / 60	plus
Harvest21	ABC05888	1411	3e-25	290 - 349	100	60 / 60	plus	ABC05888
Harvest35	U35_6024	735	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_6024 735 Hv_44K_v2
TCGAGCACTGTTGGCCTGGCCATTCGCAAACTCAACCGCAACCCCCCCACCCCACCCACC
ACCCACCACAGCAACGAACCTACAAGCGTGCGACTCGTCCCCGGGTTGTGATTCGCGGAG
GCGTTTCTCGGCGCCCAGATGAGCTCCCGGATGGCCGGATCGGTCCTCCTCCGCCACGCC
GGCGCCGGGGCCGACCGCCTCTTCGCCACCACGGCGTCCCCCGCGGCCAGGACCGCCCTC
GCCGGCGGCGAGGGTGCGTGGGCGCGGATGATGTCCACGTCCGCGGCCTCGCACGCCAAG
GACGAGGCGGCCAAGGCGGCGGCCACGGGCGACGGGGAGAAGAAGGAGGTGGCGGTCAAC
AGCTACTGGGGGATCGAGCAGTCGAAGAAGCTGGTGCGCGAGGACGGCACCGAGTGGAAG
TGGTCTTGCTTCAGGCCATGGGAGACGTACACCGCGGACACGTCGATCGATCTCACCAAG
CACCACGTGCCCAACACGATGCTCGACAAGATCGCCTACTACACCGTCAAGTCGCTCCGC
TTCCCCACCGACATCTTCTTCCAGAGGAGGTACGGCTGCCGCGCAATGATGCTGGAGACC
GTTGCCGCAGTGCCGGGAATGGTGGGCGGCATGCTCCTCCACCTGCGCTCGCTCCGGCGC
TTCGAGCAAAGCGGCGGCTGGATCCGCGCGCTGCTGGAGGAGGCCGAGAACGAGCGCATG
CACCTGATGACCTTC

Homology of Contig U35_6024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51150.1	333	2e-96	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g20540.1	334	7e-102
Arabidopsis v10	AT3G22370.1	354	8e-72	\| Symbols: AOX1A, ATAOX1A \| alternative oxidase 1A \| chr3:7906890-7908416 FORWARD LENGTH=354