barSeed - Barley Seed Development Database

Probe CUST_39073_PI390587928

Source Contig U35_6029

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39073_PI390587928	Hv_44K_v2	CTCGAGGATTATGATAATAACTGGTGTGTCTCTTGGGCTGTCCTATTCTCTTTTAAAAAA	1078	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.866	1.763	1.208	0.878	0.314	0.313
Raw	450.089	686.206	402.913	464.870	57.818	62.856

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32084.1	2107	9e-22	167 - 221	100	55 / 55	minus	ABC19716 ABC23457
JLOC1	JLOC1_20991.1	2095	5e-22	1885 - 1939	100	55 / 55	plus
Harvest21	ABC23457	314	3e-25	249 - 308	100	60 / 60	plus	ABC23457
Harvest35	U35_6029	1144	3e-25	1079 - 1138	100	60 / 60	plus

Contig Sequence (1144 bp)

>U35_6029 1144 Hv_44K_v2
TATAATCCGGAGAAGTTCAAGCTGTCACAGCCACTGATGGAGGTGCTTGGGGTTGAGGTG
GACACTCGCGCAAGGGTGATCGCAGCCCTTTGGCAGTACATCAAGGCAAAGAAGCTACAG
AATCCAAGTGACCCTTCGTACTTTATGTGTGACCCCCAACTGAAGAAGGTATTTGGGGAG
GATAAAATGAGGTTTGCTATGCTGTCGCAGAAGATATCGCAACATCTTGCTCCTCCACCG
CCCATCAACTTGGAACATAAGATCAAGCTATCAGGGAATGGAGCAAACTCAAGTGCCTGT
TATGATGTATTGGTAGATGTTCCTTTCCCACTGCAGAAGGAGATGACAGCATTTCTTGCC
AATACTGAGAAGCACAAGGACATTGAGGCATGTGATGAGGTGATATCTGCTTCAATCAAG
AAGATCCACGAGCATCGTAGGAGGAGGGCGTTCTTCCTTGGGTTCAGCCAGTCCCCAGTG
GAGTTCATTAATGCGTTGATAGCATCCCAGAGTAAAGATTTGAAGCTTGTTGCTGGTGAA
GCGAGTAGGAATATTGAAAGGGAAAGACGTGCGGACTTCTATAACCAGCCATGGGTTGAG
GATGCTGTTATAAGATATTTGAATCGTAAACCGCCTGGTGGCAGTGATGGCCCAGGTGCT
GGTGGTTCTTGAGGAGAAGATTCTTGTAGTTCCCTTTGGTGTAGAAACAACTCGTCTGTC
CTGTATCAGTATAATTCCAGAGATGGTAGTGACAAGAAAATTGGTAGGTGTTGTGAGGAA
CCTGGCAGTTTTACCTCCTTTGTCTGCTCAAATGGTTTACCTATTGTATGGTGTGTTATA
TGTTATCCCTCCTTGTCATGGTAAATGTTGAACTGGAAAAATCTTTTAGTTTGCATATCT
GCTTATTTAAATGTGACTGCAAGGTTAGGTTTGTATGAAGTGTGGGGCAACGGGGTTCTC
GCGGGGCACCATGTCAATGAGGAAGATGTGGAGATGACCTCAGAAAGTGGGCCTTCTATA
TTTGAACCTGGAAGTGGAGGGAGATGCAAACATATGTCTCAGTCCTTGTCTTTAGTACCT
CGAGGATTATGATAATAACTGGTGTGTCTCTTGGGCTGTCCTATTCTCTTTTAAAAAAAA
AAAA

Homology of Contig U35_6029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31320.1	464	3e-139	protein\|SWIB/MDM2 domain containing protein, expressed
Brachypodium v1_2	Bradi5g07730.1	527	3e-138
Arabidopsis v10	AT5G14170.1	534	2e-111	\| Symbols: CHC1 \| SWIB/MDM2 domain superfamily protein \| chr5:4568696-4570444 REVERSE LENGTH=534