barSeed - Barley Seed Development Database

Probe CUST_39072_PI390587928

Source Contig U35_6030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39072_PI390587928	Hv_44K_v2	GAATCGTTGACTGGGAATATGCATCCTTTTTAGCCATGGATGATAGATACCTTCTCTGTT	443	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62977.1	2414	2e-24	211 - 270	100	60 / 60	minus	ABC14068
JLOC1	JLOC1_41239.1	2444	8e-25	2155 - 2214	100	60 / 60	plus
Harvest21	ABC14068	2072	3e-25	1829 - 1888	100	60 / 60	plus	ABC14068
Harvest35	U35_6030	687	3e-25	444 - 503	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_6030 687 Hv_44K_v2
GAAGCATTTCTCAGTATGCCGATTTGCTAACCCAGGATTGCAAAAACACTACGGGATTTT
GGAAGCCTTAGCTTTAGGTGAGGATGAGATGCCGGATATAAAGGATGAGACCCTGCCCGA
TGAAGAGGGCATGGCTAGGCCAGGAGTAGTTAAAGCTATAGAAGAATTTAAGGCTGCAGT
GTTTGGTGAAAATTATGACCAAGAGGAAGCCGAGGCAGCGGCAGCAAAAGGTGGTGCCTC
AAAGAAGAGGAAAGCAATTGCTGATGCAGCTTCACAGAAAAGCGCAGCTTATGATTGGGC
AGACCTTGCAGACAATGGAAAGCTGAAGGACATGACGGTGATGGACTTGAAAACTTACCT
GACGGCGCATGGTCTCCCGGTTTCTGGCAAGAAAGACGCCATCATCAGCAGGATCTTGAC
TCATCTAGGCAAGTGAGAAACAAGAATCGTTGACTGGGAATATGCATCCTTTTTAGCCAT
GGATGATAGATACCTTCTCTGTTTGGGCCGTGGCGATTTTGTATAGTAGTATCGGGTGCC
AGTGTGACTTCCATGTTAGTTTGTTTGAAACCATGTATGTGCTCCCGTGGCACGCAACTT
GGGATGGAGCTGTCTTAGATGACTAGTGGCTTGTGAAGCACCATTTTTACGTTAATGAAA
GTGTGTTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08729.1	625	3e-57	protein\|ATP-dependent DNA helicase 2 subunit 1, putative, expressed
Brachypodium v1_2	Bradi1g55250.1	627	1e-61
Arabidopsis v10	None