barSeed - Barley Seed Development Database

Probe CUST_39071_PI390587928

Source Contig U35_6031

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39071_PI390587928	Hv_44K_v2	GGATGCACCTCGTGCTACAGATGAGCAAATAAAGAAAGCTTCGAATCTGTTGAGACGTAT	1319	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.546	1.344	1.047	0.708	0.284	0.244
Raw	105.550	140.756	97.172	106.746	14.492	13.755

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62977.1	2414	2e-24	720 - 779	100	60 / 60	minus	ABC14068
JLOC1	JLOC1_41239.1	2444	8e-25	1646 - 1705	100	60 / 60	plus
Harvest21	ABC14068	2072	3e-25	1320 - 1379	100	60 / 60	plus	ABC14068
Harvest35	U35_6031	2068	3e-25	1320 - 1379	100	60 / 60	plus

Contig Sequence (2068 bp)

>U35_6031 2068 Hv_44K_v2
GATGAGAGGGAGGCCAACAAGGAGATGGTCGTCTACCTCATAGACGCCTCGCCCAAGATG
TTCACGCCCGCCAACGCCGCCAAGGCAGATGAAAAGCAGGAGACACATTTCCATACCATA
GTGAACTGCATCACGCAGTCTCTGAAGACGCAGATTATCGGGAGATCCCGTGATGAAGTT
GCAATATGTTTCTTTAACACCAAAGAAAAGAAAAATTTACAGGAGCTGGCTGGTGTATAT
GCTTACAATGTCACAGAAAGAGAGCAACTTGATAGGCCTGATGCAAGACTGATTAAAGAA
TTTTCTTGTGTAGAAGATTCTTTTATGAATAACATTGGAAGCCGGTATGGAATAACCTCT
GGATCTCGAGAGAATACCCTGTACAATGCTCTTTGGGTTGCACAGGCACTGCTGCGCAAA
GGATCTGTGAAGACTGTGAGTAAGAGAATCCTCATATTCACCAATGAGGATGATCCTTTT
GGTGGTATTACTGGAGCAGCAAAGGCTGATATGATTAGGACCACAATTCAACGTGCAAAA
GATGCAAAAGATCTGGGCCTGTCTATCGAACTTCTTCCATTGAGTAGGCCTGATGAGGAC
TTCAACATGTCCCTGTTTTACGCAGAGTTGATTGGTCTGGAGGGAGATGAAGTACTGCAG
TACGTGCCATCTGCTGGTGAAAAGCTGGAGGATATGACTGATCAGCTGAGAAAGCGAATG
ATGAAGAAGCGCAAAGTCAAAACTCTCTCATTTGCAATTACAAATGATGTTTGCATAGAG
GTGAACACATATGCGCTAATCCGTCCAACTGCTCCAGGGACGATTACGTGGCTTGACTCG
ATCAGTAACCTTCCATTAAAGACTGAAAGGTCTTTCATATGCAATGACACCGGGGCCCTT
CTTCAGGCTCCCCAAGAGCGCTTTCAGCTATACAATGATAAAGCTGTTAAATTTTCCGTT
CGTGAATTGTCTGATGTGAAGAGGGTTTCAAGTCATCATCTTCGCCTTTTAGGGTTCAAG
CCATTGGATTGCTTGAAAGATTATCATAACTTAAGTCCATCAACATTTATTTACCCCAGT
GATGAGCAAATATTCGGAAGCACTCGTGTTTTCGTTGCTTTACATAGCTCGATGCTGCGC
CTTGGACGGTTTGCACTTGCGTTTTACGGGACCCCTACTCGCCCACGGCTTGTAGCCCTT
GTTGCACAAGAAGAGGTTATTTCTTCGAGTGGTCAAGATGAGCCACCTGGAATGCACATG
ATCCATCTTCCATACTCGGATGATGTTAGATATCCTGAAGAGGTTCATCTGACTTCTGGG
GATGCACCTCGTGCTACAGATGAGCAAATAAAGAAAGCTTCGAATCTGTTGAGACGTATT
GACCTGAAGCATTTCTCAGTATGCCGATTTGCTAACCCAGGATTGCAAAAACACTACGGG
ATTTTGGAAGCCTTAGCTTTAGGTGAGGATGAGATGCCGGATATAAAGGATGAGACCCTG
CCCGATGAAGAGGGCATGGCTAGGCCAGGAGTAGTTAAAGCTATAGAAGAATTTAAGGCT
GCAGTGTTTGGTGAAAATTATGACCAAGAGGAAGCCGAGGCAGCGGCAGCAAAAGGTGGT
GCCTCAAAGAAGAGGAAAGCAATTGCTGATGCAGCTTCACAGAAAAGCGCAGCTTATGAT
TGGGCAGACCTTGCAGACAATGGAAAGCTGAAGGACATGACGGTAATGGATCTAAAAACT
TACCTGACGGCGCATGGCCTCCCGGTTTCTGGCAAGAAAGACGCCATCATCAGCAGGATC
TTGACTCATCTAGGCAAGTGAGAAACACGAAGCCTTGACTGGGATATGCAAGACGTCTAG
TGTGCATCCTATGTAGCCATGGATGATAGACAATCCTCTCTGTTTGGCCCGTGGCGATTT
TGTATAGCAGTATCGGGTGCCAGCGTGACTTCCATGTTAGTTTGTTTGAAACCATGTATG
TGCTCCCGTGGCACGCAACTTGGGATGGGGCTGTCTTAGATGACTAGTGGCTTGTGAAGC
ACCATTTTTACGTTGATGAAAGTGTGTT

Homology of Contig U35_6031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g08729.1	625	protein\|ATP-dependent DNA helicase 2 subunit 1, putative, expressed
Brachypodium v1_2	Bradi1g55250.1	627
Arabidopsis v10	AT1G16970.1	621	\| Symbols: KU70, ATKU70 \| KU70 homolog \| chr1:5801159-5805724 REVERSE LENGTH=621