barSeed - Barley Seed Development Database

Probe CUST_39070_PI390587928

Source Contig U35_6032

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39070_PI390587928	Hv_44K_v2	GTCCATGTATATGATTGCTACTCGCTTATAAACAATGAAGTGTATCTTTGGCGTCAAAAA	913	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.325	2.258	1.516	0.640	0.161	0.158
Raw	991.784	1068.403	589.708	374.798	36.771	38.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74485.1	2378	3e-22	2310 - 2365	100	56 / 56	plus	ABC19246
JLOC1	JLOC1_49636.1	2107	1e-22	2032 - 2087	100	56 / 56	plus
Harvest21	ABC19246	605	2e-22	551 - 605	100	55 / 55	plus	ABC19246
Harvest35	U35_6032	983	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (983 bp)

>U35_6032 983 Hv_44K_v2
CCGACGTCGACGCCGGCCGCATCGTCTCATGGCTCGACGCCCGGCCGCCGGCGTCCGTGC
TCTACATCAGCTTCGGCAGCATCGCGAAGCTGCCGGCGAAGCAGGTCGCCGAGCTGGCGC
GCGGTCTGGAGGCGTCGGGGCGGCCGTTCGTGTGGGCCATCAAGGAGGCCAAGGCCGACG
CCGCCGTGCAAGCGCTGCTGGACGAGGAGGGGTTCGAGGAGCGCGTCAAGGACAGGGGCC
TCCTCGTCCGAGGCTGGGCGCCGCAGGTGACCATCCTCTCGCACCCGGCGGTGGGCGGCT
TCCTGACGCACTGCGGCTGGAACGCGACGCTGGAGGCCATCTCCCACGGCGTGCCGGCGC
TGACGTGGCCCAACTTCGCCGACCAGTTCTGCAGCGAGCGGCTGCTCGTGGACGTGCTCC
GCGTCGGCGTCAGGTCCGGCGCCAAGCTGCCCGTCATGAACGTGCCCGCGGAGGCCGAGG
GCGTCCAGGTCACCGGGGCCGACGTGGAGAGGGTGGTCGCCGAGCTGATGGACGGCGGGC
AGGAGGGGGCCGCGAGGAGGTCCAGGGCCAAGAAGCTCGCCGAAGAGGCCAGCGCGGCCA
TGGAGGACGGCGGGTCGTCGTACACCGACCTGGAGTACATGATCCGGCACGTATCGGAGC
TGTCGAGGACGAGGGGCCACGAGCACGGGTGGGGCACGAGCTCGACGTCCCTGCTTTCCG
CTGCGGCGGAGCTTGGAATTGGAAGCAAGAACGGCGCCGCCAAGAAGATGGAAGCCGCCG
ACGCTGCGTTGTCAGTGCACTCCTGAGCTGCATGTCGCCATGATCATCAAGTTGTATCAT
AGGATGATAGGATGCTGTATCGTACAACAATTCTTTTCAACGGTCGATACCACCATGTTG
AAGTAGCCAATTCGTCCATGTATATGATTGCTACTCGCTTATAAACAATGAAGTGTATCT
TTGGCGTCAAAAAAAAAAAAAAA

Homology of Contig U35_6032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g09990.1	529	3e-98	protein\|cytokinin-O-glucosyltransferase 3, putative, expressed
Brachypodium v1_2	Bradi1g45090.1	531	6e-115
Arabidopsis v10	AT2G36800.1	495	1e-62	\| Symbols: DOGT1, UGT73C5 \| don-glucosyltransferase 1 \| chr2:15423493-15424980 REVERSE LENGTH=495