barSeed - Barley Seed Development Database

Probe CUST_39067_PI390587928

Source Contig U35_6035

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39067_PI390587928	Hv_44K_v2	ACAGTTGTTGTATCAGTTGCAAGTCATTGTTGCTACTAGTACTAGTAGTTCATCTTGAAG	789	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.810	2.005	1.783	1.130	0.290	0.165
Raw	17947.923	31123.907	23451.533	23132.413	2150.850	1330.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7694.1	2047	2e-24	103 - 162	100	60 / 60	minus	ABC13129
JLOC1	JLOC1_5085.1	1868	8e-25	24 - 83	100	60 / 60	minus
Harvest21	ABC13129	868	3e-25	790 - 849	100	60 / 60	plus	ABC13129
Harvest35	U35_6035	868	3e-25	790 - 849	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_6035 868 Hv_44K_v2
GCACAACAAGTCGAGGCTGGCGCCGCGTTTCAGCAACGCCATGTTCTACTACGGCTCCGT
GCTCGACTCCATGGAGGCGTCCATGTCCTTCAGCCGCGGCGGCGCCATCGGCAACGGGTC
CGGCGCCGACGCGTACCTGCAGAGGGAGATCTTCAACATCGTGTGCTGCGAGGGCAGCGC
CCGCACGGAGCGCCACGAGCCGCTCGCATACTGGTGCGCCCGGCTCTGGCGCACGGGCCT
CGCCCACGTGCCGCTGGGCCCCACCGCGGCCAATCAGGCGGCCAAGCTCGTCCGCGTCTA
CTCCGGCGACGGGTTCCGCGTCCAGGAGATCGGCGGCTGCCTCTCGCTCGCGTGGCACGG
GCGCCCCCTGTTCACGGCGTCCGTGTGGAGCGCAATGCCCGCCGCCGACGGCGCCGGCAC
CTCCGAGTCCGAGCAGCACGGTGACAAGCACAAGCTGAAGATGGGCATCGGCGAGAGCAG
CGGCGGCCGTCTGCCGGGCGCCGCCGGGGCGCAGTGATGAAAGAGCTAGAGCGACGGGGC
GGTTTGAATAATTGTTAGAGTTGGAGTGTCAGTTGGTTAGTCGGAGCTTATGCTGCAGTC
GTGTGAGTCGAGTCGGTCGTCAGTCATCAGTCAGCGTGTCATATGATATCCACTCTCAGT
CTCAGATGGATATCGGTCTAGTTCGTCTTGGTTCAATAAAGTGTCGCTCTCAAACTTGTC
AGTCAGTCAGCCTGAGAGAATAGATAGTGTCGTCATTCCTTCCTTCCTGGTTGTTAATTT
ATGTGTCAAACAGTTGTTGTATCAGTTGCAAGTCATTGTTGCTACTAGTACTAGTAGTTC
ATCTTGAAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6035 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None