barSeed - Barley Seed Development Database

Probe CUST_39065_PI390587928

Source Contig U35_6037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39065_PI390587928	Hv_44K_v2	GTACATTGTAAACAGAAGCTAGAGGCCATGACAAGTTTTTAATTTAGTTTCGGGGTTTTT	602	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.019	1.809	1.199	0.844	0.368	0.436
Raw	1516.450	2183.371	1249.650	1358.912	211.384	273.699

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38009.1	2770	1e-23	2595 - 2652	100	58 / 58	plus
Harvest21	ABC12650	711	3e-25	603 - 662	100	60 / 60	plus	ABC12650
Harvest35	U35_6037	711	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_6037 711 Hv_44K_v2
GGACAGGATAACTACTACGGTGGCGGTGGCGGCAGAGGAGGCTATGGGAGGGGTGGCGGG
CAGGAAGACTCGTATCCTCAGCGTGGCGGCAGCGGTTCATATGGAAGAGGCTGATGACAC
TGCCCCGGCCATCGTCATATCACACTGGTGTTGTAGCCCTTTACTTACTTACTACTACTA
CAGCTCATCTCACTTGCTCCCGTTCTGCTGCAAATAAGCGCGACTTGGCTTGTTGTCCCT
TGGTCCGACCCTACCCTACCCACCCAGCAGGGCAGGGGTGGCTGCTGCCGTGTAGGCTTG
TGTATCTTGATGATGATCGTGTGGGTTTACTTTTTATAGGCCCTCAGTACTGTGCTTGTG
CTGTGTAAGGAGGAAGAGTTGGCGGTAGATGATGAGCAACCAACCCGCTGCGCCTCTTAA
GCGCGCGCGTGTGTGTAGCGCGAGTCTGAGATGTAGTTGTATAGGCCGATCTCATACCTG
GTGTCTGCAGTGTTGGGCTTTTACCTCATCATCACTCATTGTGTCTGTCTGGTTTTGTTT
TACAAAAAGTACAATCTAGTAGGTGTATTGTACTGCATGTTTTGTACCAGAATTCTGAAC
AAGTACATTGTAAACAGAAGCTAGAGGCCATGACAAGTTTTTAATTTAGTTTCGGGGTTT
TTTTCTAAAAAAAAGGAAAAAAAAAAATNCGAGGAAGGGNGCCGGTACCCA

Homology of Contig U35_6037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None