barSeed - Barley Seed Development Database

Probe CUST_39048_PI390587928

Source Contig U35_3093

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39048_PI390587928	Hv_44K_v2	TGGAAGATGCTGTCTACCATTGTTGTGTATAGAATTACAGTACTTCCTTAGCTGAAAAAA	1675	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.310	0.502	1.018	2.067	0.905	1.356
Raw	3.728	11.388	23.081	70.535	11.453	18.361

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4229.2	3128	2e-21	2903 - 2959	98	57 / 58	plus
JLOC1	JLOC1_4229.1	3068	2e-21	2843 - 2899	98	57 / 58	plus
Harvest21	ABC08749	1755	3e-25	1685 - 1744	100	60 / 60	plus	ABC08749
Harvest35	U35_3093	1746	3e-25	1676 - 1735	100	60 / 60	plus

Contig Sequence (1746 bp)

>U35_3093 1746 Hv_44K_v2
TGTTTTACTCACTTGAATGAAAGTAAAGCGGATCATGGGAAACCTTTAATTATTTACATA
ATGGTGCCAGTGGAGACTATCCGGATTGTACTGATCTTGCCTACCTGAATGCAATTAAAG
ATGGTGCGGACGTGATTGACTGTGCCCTTCAAGTGACAGAAGATGGAGTTCTTATTTGCA
TGAGTTCCATCAACCTGCTCGATACCACCAATGTTCAGATGACACCTTTCAGTACCCGTA
CATCTGTCATTCCTGAAATTAAGAGTACACCAGGGATTTTTACATTCAACCTTACTTGGA
ACGACATAAGCGATAGTTCTTTGAAACCCAAGATATCTAGCCCATTGAGTAGCTACTATC
TTGTAAGAAACCCGAGGTACACAAATGATGGGAAGTTTGTCAAGTTCTCAGACTTTCTGG
AATATGGAAAGGATAAGGATTTGTCTGGCATCATGATTATTGTGGAGAATGCTGCATTTA
TGGCGAAGTCATTAGGAGTTGATGTTCTCGAGTCCTTAACCACTGCCTTAAGTGAGGCTG
GCTATGATAATCAAACTACCAAGGAAGTCATGATCCAGTCAAAAGATAGCGCTGTTCTTG
TCAAATTGAAGCAGCAGAAAACAAAATACAAGCTTGTTTACACTCTCCCGCTAGGCATTG
GGGATGCTTCTCCTTCCTCCCTAGCTGATGTCAAGAAGTTTGCCGAGGCTGTAGTCGTTG
ACAGGAATTCCTTTTTTGCAACAAGTGTTCAATTTATCATCAACCAAACCAGCCTTGTGA
AAGATCTGCAGTCCGCAGGACTAACGGTATATGCGCAGGTGTTCCGCAATGAGTTTCTAT
CACAACCTTGGGACTTCTTCTCAGACGAGACAGTGGAAATCAATAGCTATGCTCAGTCTC
TTAAAGTCGATGGCTTAATTACTGACTTCCCCAAGACAGTAAGGAGATACAAGAGGAATT
CATGTACAGAAAAGGTCAAGCCCGCCTACATGGAGACCGTTGAAGTCGGCGGCCTCGCGC
AGTTACTCGAGAGAAATGCCGTTCCTCAGGCTCAGCCGCCAACCGTGTCACCGATGCCAG
GATTGAACGCAACAGAGGTGCAGCAGCCGCCATTCCCGCCTGTCGCGTCCAAGAATGCAC
CTCCTGGTGCCGCCCCACCTCCGGGTTCATCGCCGTCTGACGCTCACACAACAGCTGCAA
GCACCTGCATTCTGCTGGTAGCGGCCTGTGCAGCTCTGCTGCTTTGAGCAGTAGGCCATG
AGGCCGTGTGCTGGTAGGTTAAGTTACCAGAAGGGCCATTAGACTTGCGCAAGCTATAAT
CTTGCTATTTTGTGCAACATATACACACATATACACCGGGCGTTCGTTTCTGTAGCTATT
CCGGTACATTGGTGTATTTGATCTATCAATTGAATTGAAGAGGTTCGGTTGACAAAAAAA
AAAAAAAAACTGTAAAGTAATATAAGAGCGTTTAGAAACGTTCTTATATTACTTTAAGGA
GGAAGTATAAATCTTTAGAGAGACTGCATTATAGACTATATTCGGAGCAAAATGGATGAA
TTTAGGTCTAAAGTATGCCTATATACATCCATATGTAGTTTATAATGAAATCTTTAAAAA
GATTTATATTTAGGGCTTCATATTTCATAGTACTACATTGCTGAGTGCTGACCGGTGGAA
GATGCTGTCTACCATTGTTGTGTATAGAATTACAGTACTTCCTTAGCTGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_3093 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39350.1	779	4e-154	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi3g39790.1	778	4e-179
Arabidopsis v10	AT5G55480.1	766	9e-100	\| Symbols: SVL1 \| SHV3-like 1 \| chr5:22474277-22477819 FORWARD LENGTH=766