barSeed - Barley Seed Development Database

Probe CUST_39047_PI390587928

Source Contig U35_3095

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39047_PI390587928	Hv_44K_v2	CATGTGGCCGCCACTTAATAAGCTTTCTCTCTTCTCTTTGATGTGATCAATTGGTTCCTC	1377	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.182	6.442	0.868	0.900	0.895	0.797
Raw	62.243	78.831	9.279	14.327	3.608	3.558

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46212.1	2207	3e-24	1695 - 1753	100	59 / 59	plus
Harvest21	ABC13148	985	1e-24	883 - 941	100	59 / 59	plus	ABC13148
Harvest35	U35_3095	1480	3e-25	1378 - 1437	100	60 / 60	plus

Contig Sequence (1480 bp)

>U35_3095 1480 Hv_44K_v2
CCATCCCCCGATTAAACTACTCCATATCGCTAGTAAGCAGAAGCAGAATCGATCCATCAC
ACCAAGCTAGCTAGCCTCCTAGCTCGCTCGCTCGCCCGCACACCCGCGATCCATTCTGCT
TCTTCCCCTTCCTTCCCACTCCGGATCAGGTGCATGACCACCGGCGAGACCTAGCTAGGG
AGGGAGGGAGGGAGGGAGGGATGGAGCAGGGGGAGGAGGACGGGGACTGGATGATGGAGC
CGGCGTCGGGGAAGAAGGGCGGGGTGATGATCGACAGGAAGAAGCGCTTCAGCGAGGAGC
AGATCAAGTCGCTCGAGTCCATGTTCGCCACGCAGACCAAGCTGGAGCCCCGCCAGAAGC
TGCAGCTGGCCCGGGAGCTCGGCCTGCAGCCGCGCCAGGTCGCCATCTGGTTCCAGAACA
AGCGCGCGCGCTGGAAGTCCAAGCAGCTCGAGCGCCAGTACGCCGCGCTCCGGGACGACT
ACGACGCCCTCCTCTCCAGCTACGACCAGCTCAAGAAGGACAAGCAAGCGCTCGTCAACC
AGCTGGAGAAGCTAGCAGAGATGCTGCGGGAGCCGGGCGGGGCCAAGTGCGGAGATAATG
CCGGCGCTGCTGACAGGGACAACATGCGCCTGGCCGTGGCCGGCATGAGCATGAAGGACG
AGTTCGCGGACGCTGCCGGGGCCAGCAAGCTCTACTCGGCGTCTGCCGAGGGCTGCGGCG
GCAGCGGCAAGCTCTCCCTCTTCGGCGAGGAGGATGACGACGCGGGCCTCTTCCTCCGGC
CCTCGCTGCAGCTGCCAACCGCGCACGACGGCGGCTTCACGGCGTCGGGGCCGGCCGAGT
ACCAGCAGCAGTCGCCGTCGTCGTTCCCGTTCCACTCGAGCTGGCCGTCGTCCGCGACGG
AGCAGACCTGCAGCAGCTCCCAATGGTGGGAATTCGAGTCCCCGAGCGAGTAAGTAGAGC
CATCGGTCAAGCACCATGCAAGGAATCGCCGACGTGATCGACCATGCAACAGATCAGTGT
TCCTAACACAGAGCACTATACTGCCGATCGAATCCGTGGAGAAGACGACGGCGCGATCGA
TCATATGCAACCGAAGATGGTGGTGTCAAGTGTGTACATAGCTCGAAACCCAGGTCTGTC
CAATCCAGTCCAGTACGTCCAGGCAGCCTCTTCCTTCTCAATCAGCAGTCAGCACGCCAT
TTTTCTTCACCCTCTTCCTCTTTAAGAATCACTTGCTCTTGTCAATTACCTGCCACACCG
TGTAATCCACAGGGAAACTAGTCACAAAACCAAATTATAGAGACCGATCTTCAGATGCAA
GTGCATGCAACTATTTAGCTAGCTAGTAGTAATACGCATCCATGCATGGCTGTTCATCAT
GTGGCCGCCACTTAATAAGCTTTCTCTCTTCTCTTTGATGTGATCAATTGGTTCCTCNGG
AATGCAACACAATGATTGCGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_3095 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g35910.1	250	2e-80	protein\|homeobox associated leucine zipper, putative, expressed
Brachypodium v1_2	Bradi4g35910.1	244	2e-84
Arabidopsis v10	None