barSeed - Barley Seed Development Database

Probe CUST_39045_PI390587928

Source Contig U35_3097

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39045_PI390587928	Hv_44K_v2	GTATCTATCTATCTCTCCCTAATCTCTCTCTAATAATAAAGCAAATTGAGTTTCTGGTCC	1726	GeneList: bisque4 MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	3.150	2.375	0.812	0.221	0.202
Raw	221.622	920.865	569.448	328.932	28.645	30.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53007.3	2779	3e-22	2695 - 2753	98	58 / 59	plus	ABC07068
MLOC	AK248259.1	1649	9e-22	1595 - 1649	100	55 / 55	plus	ABC07068
JLOC1	JLOC1_34010.2	2538	1e-22	2476 - 2534	98	58 / 59	plus
JLOC1	JLOC1_34010.1	2608	1e-22	2546 - 2604	98	58 / 59	plus
Harvest35	U35_3097	1803	3e-25	1727 - 1786	100	60 / 60	plus

Contig Sequence (1803 bp)

>U35_3097 1803 Hv_44K_v2
GGCGGCGACGAGTTCGCCGAGTTCATCGACGCCGAGCGCGGGAACCATCCTACCATCGTT
AAGGTTCTGTGGGATAACAGCAAGAGCAAAGTGGGGGAAGGATTCCCACATCTGGTGTAC
CTCTCTCGAGAGAAAAGCCCCAGACATCGCCACAACTTCCAGGCTGGTGCCATGAATGTT
CTGACAAGGGTGTCAGCCGTGATGACCAACGCTCCCATCATGCTGAATGTGGACTGCGAC
ATGTTCGCCAACAATCCGCAGGTCGCCCTACACGCGATGTGCCTCCTATTGGGGTTCGAC
GACGAGATCCACAGCGGGTTCGTCCAAGTGCCACAGAAGTTCTACGGTGGCCTCAAGGAC
GATCCCTTTGGCAACCAGATGCAGGTTATAACCAAGAAAATTGGAGGTGGAATCGCCGGG
ATCCAAGGCATGTTCTACGGCGGCACGGGCTGTTTTCACCGCAGGAAAGTCATTTACGGC
ATGCCGCCACCTGACACCGTCAAACACGAGACAAGAGGTTCACCATCTTACAAGGAGCTG
CAAGTCAGGTTTGGGAGCTCAAAGGTGTTGATCGAATCATCTAGGAACATCATCTCAGGA
GACCTGCTCGCTAGACCAACCGTTGATGTATCGAGTCGCATCGAAATGGCAAAACAAGTC
GGCGATTGCAACTATGAGGCTGGCACGTGTTGGGGCAAGGAGATTGGTTGGGTCTATGGA
TCAATGACAGAGGACATTTTGACCGGACAACGGATCCATGCGGCGGGTTGGAAATCGGCC
TTGTTGGACACCAACCCACCGGCATTCTTGGGATGTGCTCCGACCGGGGGACCGGCCAGC
TTGACCCAGTTCAAGAGATGGGCAACAGGGGTTCTGGAGATACTCATCAGCCGGAACAGC
CCTATCCTCGGCACCATCTTCCAACGCCTCCAACTCCGGCAATGCCTTGGCTATCTCATC
GTCGAGGCGTGGCCCGTGAGGGCGCCTTTCGAGCTGTGCTATGCACTATTGGGACCTTTC
TGCCTTCTCACAAACCAGTCCTTCTTGCCAACGGCATCGGATGAAGGTTTTCGCATCCCA
GTAGCTCTATTCTTGAGTTACCACATATACCACTTGATGGAGTACAAGGAGTGCGGGCTC
TCTGCCCGCGCCTGGTGGAACAACCACAGGATGCAACGCATCACCTCGGCCTCCGCCTGG
CTCCTCGCCTTCCTCACCGTGATCCTCAAGACACTAGGGCTCTCTGAGACCGTGTTCGAG
GTCACCCGCAAGGAAAGCAGCACGTCCGATGGCGGCGCCGGCACCGACGAGGCCGATCCA
GGACTGTTCACATTCGACTCGGCGCCCGTTTTCATCCCGGTGACGGCGCTCTCAGTGTTG
AACATTGTGGCCCTCGCCGTCGGGGCATGGCGCGCCGTCATCGGGACTGCGGCGGTCGTT
CATGGTGGCCCGGGCATCGGAGAGTTCGTGTGCTGTGGCTGGATGGTGTTGTGCTTCTGG
CCGTTCGTGAGAGGGCTTGTCAGCAGGGGAAAGCATGGAATCCCGTGGAGCGTCAAGGTG
AAGGCTGGTTTGATTGTGGCTGCGTTCGTGCACCTCTGCACAAGGAACTAACCGGCCGGG
CTGGCCATCGAAATATTGGAAGCGTAATTTTAGTTCTACCATTGGAACATGTAACGAAGA
CTCAAGCAGGAATTAAAGCGTGTTATTAAAGGAAGTTTGACCCAATGTATCTATCTATCT
CTCCCTAATCTCTCTCTAATAATAAAGCAAATTGAGTTTCTGGTCCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_3097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g20090.1	751	0.0	protein\|CSLH1 - cellulose synthase-like family H, expressed
Brachypodium v1_2	Bradi5g10130.1	755	0.0
Arabidopsis v10	AT2G32540.1	755	1e-118	\| Symbols: ATCSLB04, CSLB04, ATCSLB4 \| cellulose synthase-like B4 \| chr2:13814686-13818289 FORWARD LENGTH=755