barSeed - Barley Seed Development Database

Probe CUST_39040_PI390587928

Source Contig U35_20102

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39040_PI390587928	Hv_44K_v2	GTCCCTCTGTTTTACTGTAAGATGATAATGCTATGGTTTAAAATGAGATAATTGCACTGC	1197	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.070	1.346	1.396	1.221	0.437	0.446
Raw	192.614	388.461	339.195	461.093	59.950	65.457

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51073.4	4703	2e-24	4610 - 4669	100	60 / 60	plus	ABC15864
MLOC	MLOC_51073.3	4594	2e-24	4519 - 4578	100	60 / 60	plus	ABC15864
JLOC1	JLOC1_32592.1	4974	8e-25	4514 - 4573	100	60 / 60	plus
Harvest21	ABC15864	1283	3e-25	1198 - 1257	100	60 / 60	plus	ABC15864
Harvest35	U35_20102	1283	3e-25	1198 - 1257	100	60 / 60	plus

Contig Sequence (1283 bp)

>U35_20102 1283 Hv_44K_v2
GTGATGATATGCTATTTCTTCTACAAGAACGTGACTTTTGGAGTCACCATCTTTCTGTAT
GAAGCATTTGCATCCTTTTCAGGGAAGCCAGCTTACAATGATTGGTTCTTGTCACTGTAT
AATGTATTTTTCACCTCCCTTCCTGTCATTGCGTTGGGCGTATTTGATCAGGATGTTTCT
TCCCGGCTGTGTTTACAGTATCCGGAGCTGTACCAAGAAGGTGTGCAGAATGTATTATTC
AGCTGGCGTCGAATACTTGGCTGGATGTTTAATGGTGTCGTGAATGCCATCTTAATATTT
TTCTTCTGCACCACGGCCCTGAAGGACCAAGCATTTCGTCAGGATGGCCAAGTTGCAGGC
TTGGATGCCCTAGGAGCTGCCATGTACACTTGTGTCGTATGGGTCGTCAACTGCCAAATG
GCCCTCTCAGTGAACTACTTCACCATAATCCAACACATATTCATATGGGGTAGCATTGCT
GTGTGGTACATCTTCCTCATGGTTTATGGTAGTATAGACCCAAAGTACTCCAAGACAGCA
TACATGGTCTTCATTGAACAGTTGGCCCCAGCGCTATCATATTGGTTGGTGACACTTTTC
GTGGTGACGGCCACACTCGTCCCGTACTTCTGCTATGCCGCAATTCAGATCCGTTTCTTT
CCAATGTTCCATAACAAGATTCAGTGGAAAAGATACTTGGGGAAGGCTGAAGATCCAGAG
GTGGCAAGGCAGTTGTCTTCACGACACCGGTCATCGTCGCACCCAAGGATGGTTGGGATC
TCTGCTCGTCGTGACGGCAAGGCTATGCAAGTTAAAAAGGGAACTGATGTAGAGGTTGAA
GGATAACATTTTCTCAGTAGATTTTGTGTTTTTGTACAGATTATAGAATGCCATCTCCTG
AAAGATGACAGAAAACGGACCGGCTAGGACTTGTGAATATCCTCGGGTTGTTGCTTCTAT
GGTTCCATGTAGTTCATCCAGTTCAGAGGATAGAGCTAGATCACAGAATTTCGTAGATAG
TAGGCCACAAGAAGAAGAAGAGAAGACCTGCTGTAAAGTTCATTTAGCAATTTAAGGCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCCCTTCTCTTTTGCTCTTACACCCGTTTAT
GCGTGTGCTCTGATGCAGAATTTCACTTTGTTTCATGGCTTTTGCAACATATCTGTTGTC
CCTCTGTTTTACTGTAAGATGATAATGCTATGGTTTAAAATGAGATAATTGCACTGCATT
TCTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g29380.1	1208	1e-158	protein\|phospholipid-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g42310.1	1204	1e-169
Arabidopsis v10	AT3G25610.1	1202	7e-112	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \| chr3:9308942-9313353 REVERSE LENGTH=1202