barSeed - Barley Seed Development Database

Probe CUST_39037_PI390587928

Source Contig U35_20105

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39037_PI390587928	Hv_44K_v2	GGAACTATTTTGATAGTACCAGTAAGGAAAAAAGATTCATTGATACTCGTCGTACAAGCA	988	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80251.6	2481	7e-23	1331 - 1390	98	59 / 60	plus	ABC12017 ABC44342
MLOC	MLOC_80252.1	2468	7e-23	1318 - 1377	98	59 / 60	plus	ABC12017 ABC44342
MLOC	MLOC_80251.5	3110	7e-23	1791 - 1850	98	59 / 60	plus	ABC12017 ABC44342
MLOC	MLOC_80251.1	3783	7e-23	2457 - 2516	98	59 / 60	plus	ABC12017 ABC44342
MLOC	MLOC_80252.2	2375	7e-23	1225 - 1284	98	59 / 60	plus	ABC12017 ABC44342
MLOC	MLOC_80251.2	3686	7e-23	2360 - 2419	98	59 / 60	plus	ABC12017 ABC44342
JLOC1	JLOC1_53435.6	3500	4e-23	2166 - 2225	98	59 / 60	plus
JLOC1	JLOC1_53435.5	3428	4e-23	2094 - 2153	98	59 / 60	plus
JLOC1	JLOC1_53435.4	3472	4e-23	2138 - 2197	98	59 / 60	plus
JLOC1	JLOC1_53435.3	3726	4e-23	2392 - 2451	98	59 / 60	plus
JLOC1	JLOC1_53435.2	3456	4e-23	2122 - 2181	98	59 / 60	plus
JLOC1	JLOC1_53435.1	3698	4e-23	2364 - 2423	98	59 / 60	plus
Harvest21	ABC12017	1064	3e-25	17 - 76	100	60 / 60	minus	ABC12017
Harvest35	U35_20105	1064	3e-25	989 - 1048	100	60 / 60	plus

Contig Sequence (1064 bp)

>U35_20105 1064 Hv_44K_v2
GCTCGGCGAGCTGCCCCTCGGCCCATGCTCCAACCGCCAGGGCTCCGGCCCGGCCCTGCA
TTTCAGCCTGCTCGGCTCTAAGCTCTACGTCAGCTTCAGTCAGGTGGTCGTGTCCAATTT
GCCGGTCACAGGGATGAGGCTGCACCTCGAGGGCAAGAAGAACAACCGGCTAGGCATCCA
CCTGCAGCACCTGTCGGCCACCCCGACGTTCATCGCCGCCGTGCAGGCGCAGGCCGACAT
GGCGCCGGCGTGGCGGGGCTCCGAGTCGGTCACCGACGACCACCGCTACTACGAGCCGGT
GCAGTGGCGGACGTACGCGCACGTCTGCACCGCGCCGGTCAAGTACGACCCGCGGTGGCA
CCGCTCCGGCGACGACGGGAGCCGCGCCGCCTACGTCGTGACCGGCGCGCAGCTGCACGT
CATGGCGCACGACTCAACCACCGTGCTGCACCTCCGGCTGCTCTACTCGGAGCTCCCCGG
CTACGCCGTCGTGCAGTCCAGGTGGGGGCGCGGTACGGCGAGGAGGGCGTCGGGGAAGTG
GTCGTCGTCGAGCTTCCTGTCCATGCCCTTCTCGGGGTCCTCCTCGTCGTCGTCGTCCGG
CGGCGGGCAGAAGCGGGGGCCGCCGCTGGTGGTGGCCAGCATCAACTCCGGCGTGTTCGC
GGGCGGCCCGCCCGTGCCCGTGGGCGCGCAGAAGCTGCTCAAGTTCGTGGACACCTCGCA
GGTGACCATGGGCCCGCACGACAGCCCCGGATACTGGCTCGCCACCGGCGCCAGGCTCGA
CGTCGACAAGGGCAAGATCTCGCTGCACGTCAAGTTCTCCCTGCTCGCCCCGTCTCCTTC
CTGACAGTTCCAGAGTCTGTACAGTTCTCCTGATGCCAAATGCTAACTGACCCCTGTGAT
TAAGACCTGCTCCTTTTGGATTTTGGATTTGTTTGGAACCTGTAAATGCCGCTGTGCAAC
GAGTGTAAATTCATACTGTAAAACCAGAGGAACTATTTTGATAGTACCAGTAAGGAAAAA
AGATTCATTGATACTCGTCGTACAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50340.1	621	1e-107	protein\|membrane attack complex component/perforin/complement C9, putative, expressed
Brachypodium v1_2	Bradi3g59900.1	622	3e-115
Arabidopsis v10	None