barSeed - Barley Seed Development Database

Probe CUST_39027_PI390587928

Source Contig U35_20115

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39027_PI390587928	Hv_44K_v2	TGAGTCTGTAAAACTTGTACTTGTGCTGCCATCCAATCAATCCGATACGGCAACGTGTGA	1804	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.972	1.931	1.104	0.765	0.348	0.401
Raw	2666.413	3993.497	2053.447	2234.627	358.353	439.431

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374606	2285	7e-23	2220 - 2279	98	59 / 60	plus	None
MLOC	MLOC_72341.3	1896	7e-23	1831 - 1890	98	59 / 60	plus	None
MLOC	MLOC_72341.2	1989	7e-23	1845 - 1904	98	59 / 60	plus	None
JLOC1	JLOC1_48109.1	1949	4e-23	1837 - 1896	98	59 / 60	plus
Harvest35	U35_20115	1887	3e-25	1805 - 1864	100	60 / 60	plus

Contig Sequence (1887 bp)

>U35_20115 1887 Hv_44K_v2
GAAACCCGGACTGGAAGAGGACGCACAAGGCAGCGAGCCACACGGCGGTGGCCGTCAAGA
TTCTGCTGAAACAGGGGGCTACCTGCGTCGGGAGGACAGTCATGGATGAACTCGGCTTTG
GTGTTACTGGAGAAAATTTACACTGTGGAACACCAATCAACCCAGCATCTCCATCAGTCC
TCCCTGGAGGGTCATGCAGTGGTGCCGCTGTCGCAGTTTCTGCACAGCTTGTCGAGTTTG
CTCTCGGTACTGATACAACTGGTGATTTGAGAATTCCAGCATCTTTCTGTGGTGTACTTG
GTTTCCGGTCTTCTCATGGGGTTGTGTCTACTCTTGGGACCTTACCGAACTCACATAGCC
TAGATACCATTGGATGGCTTGCACGAGATCCTCATATACTTAGTCGTGTTGGAGATGCTC
TGTTACCCGTTGCTGCATGTGGACTTAAGGGGAAAAGGCAGTTGGTTTTTGCTGATGATT
GCTTTGAGTTGCTGAAGATTCCCAACCAGAAAACGGTGGATGTCATAGAAAATGCTGTCC
ATACATTACCTGGTGGATATCAGCCACCTAAGCACATCAATATTGGCCAGTATATCAGTT
CAAATGTACCTAGCTTGAAGGAGTTCTGTGAACCTTCTACAAAGTTGCAAGAAGGAAAGT
CGGCCTTGAAAGCTCTTTGCACGGTCATGCTATTATTACAGAGATATGAATTCAAATCAA
ACCATGAGGATTGGGTTAACACTGTAAAACCCAAGCTTGGTCTTGAAGTATCCACCCGTG
TACTACAAGCTGTAAATTTCACAGACGATAACATCAAATCCTTGTACATTGTACGGACTG
AATGGCGAGCTGCACTGAAGAATCTTCTAAAGGATACTGGGATTTTAGTTCTGCCAACCA
TGGCTGGACACCCTTTGAAAAGGAACTCCAAACAGAGATTGTCATCTGAATTTGAAGATA
AAATGTACGCATTTGTCAGCATTGCTGCACTTTCAGGCTGTTGCCAGGCTACTGTTCCCT
TGGGAAATCACAATGATCATCCTATATCTATTTCATTTGTAGCAGCTCATGGATCAGATA
AGTCCCTTCTTCGTGCTATCTTGGATATGTATTCAACTATCCAAGAACAAATAGTTTTGG
CATCCAAGTTGACACTCCCACCAGTAATCGATCGTGATGTTGATGCATCAGAGCTGTTGA
AAGAAAAGGGAAATAATTCCTTCAAAAGAAAACAATGGAGCAAGGCTATTGAATTCTATT
CCGGGGCAATCAAATTGAATGAGACAAATGCGACATACTATTGCAATAGGGCAGCTGCTT
ATCTGGAACTTGGCCGTTTCAAGCAAGCTGAAGCGGATTGCGACCAGGCCTTACTGTTGG
ATAAAAAGAATGTGAAAGCATATCTCCGACGAGGCACCGCAAAAGAAAGTTGTATGAATT
ACCAAGAAGCTCTACAAGATTTCAGGCATGCTTTAGCTTTGGAGCCGCAGAACAAAACAG
CCCTCGCGGCAGAGAGAAGGCTACAGAAACATCTCAGGTGAGATAGGGGCGGATGAGCTG
GAACCCTCCTAAGTAGCGAATATTTGGTTGTAAAGAAAGAGCCCCTCTGCTCTGTGAGAA
GAATTGCCCTCGAGACACTGGACACTTGGCTTCTGTAGTGCTGGGTGTCGTTGTTCTCAT
TTCATAAATTGAAATTTTGTCCGAATTTCATGAAGATATCGCCCGTCTTCGCAGTACAGC
GGAAACTGGCACGCTGAGAGATTGTAGGCCAGCTGCTGTTGCGCGGAACATTCAAGTGTT
CGGTTGAGTCTGTAAAACTTGTACTTGTGCTGCCATCCAATCAATCCGATACGGCAACGT
GTGACGACGGTAAAAAAAAAAAAAAAA

Homology of Contig U35_20115 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g51810.1	614	protein\|expressed protein
Brachypodium v1_2	Bradi3g58760.1	610
Arabidopsis v10	AT5G09420.1	603	\| Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64 \| translocon at the outer membrane of chloroplasts 64-V \| chr5:2928316-2931750 FORWARD LENGTH=603