barSeed - Barley Seed Development Database

Probe CUST_39016_PI390587928

Source Contig U35_20126

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39016_PI390587928	Hv_44K_v2	TGTAGGAAAAAGTTAGATTGCTGCCGTTGAGTATCTGTAACATGGAAGTTAGAAATACAC	913	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17998.2	1994	2e-24	22 - 81	100	60 / 60	minus	ABC12834
MLOC	MLOC_17998.1	2142	2e-24	154 - 213	100	60 / 60	minus	ABC12834
JLOC1	JLOC1_12440.1	2195	8e-25	1868 - 1927	100	60 / 60	plus
Harvest21	ABC12834	1074	3e-25	88 - 147	100	60 / 60	minus	ABC12834
Harvest35	U35_20126	1071	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_20126 1071 Hv_44K_v2
GTTAAATGACAGCTCCAGCCTGGTGCTGAAACAATTGGGATCTCAATCTATGATCGATTA
TTACTTTAGGGCACAACGTGCAAATTCAGATTCAGATTTGAAGTACAGAAACCCAAAGTA
TCTTTCAATGCTTAATCATCTGAGATTCTACTTGCCTGAGATTTATCCAAAGCTCGACAA
GATGGTCTTTCTTGATGGCGATGTAGTAGTAAGAAAGGACATAACTGGCCTCTGGTCAAT
CGATATGAAGGGGAAGGTTAATGGTGCTGTAGAGACTTGTGGAGAGAGCTTCCATCGCTT
TGGCCGTTACTTGAATTTCTCAAGTCCTGTTATTGCAAAGAATTTTGACCCCGATGCATG
TGGCTGGGCTTTTGGAATGAACGTGTTTGATCTGGCTGAATGGAGGCGGCAGAACATAAC
TGAACTCTACCACTTTTGGCAGAAGCTTAACGAGGACGGACTGCTATGGAAACTTGGCAC
TCTCCCTCCAGGTCTGGTTACATTCTGGAACAAGACATTCCCCCTCGATCGATCATGGCA
TGTTCTCGGTCTAGGTTACAACCCACATGTAAGCAGTAGAGACCTGGAGCGTGCCGCAGT
CATACATTACAATGGCAACCTGAAGCCCTGGCTTGAGATTGGCCTCCCCAAGTTCCGAAG
CTACTGGTCAAAGTACCTTGACTATGATCAGCCTTTTCTGCGGGAATGCAACATCAATCC
GTGAAGCAAGACCAGTACCTCCGACTCCAAGCCATTCTGACTCTAGCCTAGGTAGTTCAG
TGTTTGATCTATTTGTCTCTCTTGATTTTTGTGTCGGTATCCCATGTTGGGTATTTGTAG
GGGTTGAGATTACATGCCAGTAGGGGAAAATAATAATTCTGCACTCCAAATGCTTTTTGG
CATGCCATTGTTGTGTAGGAAAAAGTTAGATTGCTGCCGTTGAGTATCTGTAACATGGAA
GTTAGAAATACACGAGAAAGACCCAAAGACCCTGGGTGGCTAACACCATGAGGCGGTGGG
CTAGTCAGGTAGGGTTCAAGCCTCACTTCTATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20126 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23780.1	644	3e-152	protein\|glycosyl transferase 8 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g20550.2	640	4e-162
Arabidopsis v10	AT5G47780.1	616	7e-139	\| Symbols: GAUT4 \| galacturonosyltransferase 4 \| chr5:19347991-19350517 FORWARD LENGTH=616