barSeed - Barley Seed Development Database

Probe CUST_39010_PI390587928

Source Contig U35_32105

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39010_PI390587928	Hv_44K_v2	TTTGCTTATTTGCGAGGTTCCTTGTTGAGTGAGTGAGTGATCGGCGGCATGGGCGTGGAG	48	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.769	1.683	2.023	0.843	0.441	0.423
Raw	551.668	713.200	834.479	523.208	98.171	105.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60491.1	713	2e-24	261 - 320	100	60 / 60	plus	None
JLOC1	JLOC1_39454.1	779	8e-25	658 - 717	100	60 / 60	minus
JLOC1	JLOC1_39452.1	1949	8e-25	90 - 149	100	60 / 60	plus
Harvest35	U35_32105	418	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (418 bp)

>U35_32105 418 Hv_44K_v2
GGGGAGCCCACCTTCTCTTCTGACACCGCACGGGAATCTCCGGCCATCTTTGCTTATTTG
CGAGGTTCCTTGTTGAGTGAGTGAGTGATCGGCGGCATGGGCGTGGAGGTCGTCTCCGGC
GGGGCTGTCGAGGCGGTGGCGGCGGCGCCGGCTAAGGTCGAGGTGGAGGCGGGCGCGGCT
GCTGTGGTGGCCAAGAACATGTCGTTCAGGGAGGAGAGCAACCGCCTGGGCGATCTCAAG
GACCACGAGAGGAAGGCGCTCGCTGAGCTCCGCGCCATGGTCGAGGAGGCCGTGGTGGAC
GGCAAGCTGTTCGACTTGGAGGACGGGAGTGGCAAGGTGAAGGTGAAGGTGGAGGCCAAG
AAGAAGGAGGGGAAGAAGAAGAAGAAGGCCGTGGAGAAGAAGCCGGTGGCTGCGGCTG

Homology of Contig U35_32105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None