barSeed - Barley Seed Development Database

Probe CUST_39000_PI390587928

Source Contig U35_20135

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39000_PI390587928	Hv_44K_v2	CTGGTGGCGCGTATGGAGCCGCTGTTTGAGAAGCACATACAGACCAGGATCTACAACCTC	776	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.453	0.886	1.505	1.112	0.677	0.544
Raw	78.731	65.724	113.390	113.339	27.542	24.431

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67256.2	2809	2e-24	2151 - 2210	100	60 / 60	minus	ABC08287 ABC38717
MLOC	MLOC_67256.1	3095	2e-24	2243 - 2302	100	60 / 60	minus	ABC08287 ABC38717
MLOC	MLOC_67256.3	3030	2e-24	2064 - 2123	100	60 / 60	minus	ABC08287 ABC38717
JLOC1	JLOC1_44388.1	3020	8e-25	783 - 842	100	60 / 60	plus
Harvest21	ABC16690	759	3e-25	700 - 759	100	60 / 60	plus
Harvest35	U35_20135	836	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_20135 836 Hv_44K_v2
ATTTCCTCTCTTCCCGCCGCCGCCTCCCGCCATTCACCCCAGCCCCGTGCCCCTCCCCTC
CACCTCCCGCTCATCTCCACCCCAACCCTCGTCTCTCTCCCTCTCCCTCTCCCTCTCTCG
CCTCTCTCTGCGCGCAAGCCATGGCGTCTAACGGCGGCGGCAACAGCAACTCACCCTACT
CGCCGGATGTCCGCCCGTCGAGCCCGCTCCCGGCCACCAACTCATCCCCTCCCCAGTCCG
CTCGCCGCGCCGGCGGGCGCCTCCGCCGCGGCCCCACCTCGTCTCCCTCCCTCGGCGGGT
TCGAGACGCCGCCGCCACCGGGCCGCCGTATTCCGTCCGGTGCTGGTGCCGGCCGGCAAC
GCCAAAACTGGACTGGACGGTTTCCGCCAACTCCGTCCACTCCCATGTCCACCGACGACG
TCCCGCCGTCCTCCGAAGCTGGGGAGGAGGACACGCCCGAGACCGACGGCGGCGGCGTCG
GCGCCGATGCCACCCCGGTATTCGTCTGGGGCACCAATATCAGTGTTCAGGACGTGAACG
CTGCCATTCTGCGTTTTCTGCGCCACTTCCGGGACCCCCGCGACGCCGGCCGGGTCGACC
CAGTCATGGACGAGGGCAAGTACATGCGCGCCATCCACCGCATCCTTGAGCTCGAGGGCG
GCGAGTCGCTCGACGTTGACGCACACGACGTGTTCGACCACGATCCCGACCTATACGGCA
AGATGGTACGCTACCCGCTGGAAGTGCTTGCCATCTTCGACATCGTCCTTATGGACCTGG
TGGCGCGTATGGAGCCGCTGTTTGAGAAGCACATACAGACCAGGATCTACAACCTC

Homology of Contig U35_20135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g36390.1	863	4e-97	protein\|MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed
Brachypodium v1_2	Bradi2g40600.2	777	9e-105
Arabidopsis v10	None